PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058380001
Common NameGSBRNA2T00058380001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 565aa    MW: 61938.2 Da    PI: 6.1359
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058380001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07226246526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f r G C++Gd C +aHg
  GSBRNA2T00058380001 226 PCPDFKR-GDCRRGDMCEYAHG 246
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.02E-137131IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-139130IPR020683Ankyrin repeat-containing domain
CDDcd002042.13E-1213130No hitNo description
PROSITE profilePS5029716.30859127IPR020683Ankyrin repeat-containing domain
SMARTSM002480.485987IPR002110Ankyrin repeat
PfamPF127962.7E-959124IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.20992127IPR002110Ankyrin repeat
SMARTSM002480.01192124IPR002110Ankyrin repeat
SMARTSM003561.3E-5221247IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-5226246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432226248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4226248IPR000571Zinc finger, CCCH-type
SMARTSM0035668256279IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.878256280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MMNHLRVETE DTFSSLLELA ANNDVEGVRL SIERDPSCVD EPGLWYGRQK GSKSIMVNDL  60
RTPLMVAATY GSLDVIKAIL PLTNVNRACG NDQTTALHCA ASGGAVNAVQ VVKLLLAAGA  120
DLDALDGDGQ RGGDVIVMLQ ELLLSSSASH SSPTEFKKEY PVLVLDPSLP DIKNCIYATD  180
EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF KRGDCRRGDM  240
CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPD ELRPLYSSTG SAVHSPRSGA  300
EFAAGLSPMS PLSPSSSAMS WPHPSVPALH LPGSNLQSSR LRASLNARDV LSDYEQEQLL  360
NEFSNSLSWS GRMKTLPHSN LEDLFSPEGG SSSPRFTDSA VFSPTHKSAV FNHVDHSLFS  420
GGGGRMSPRN VVEPISPMSS RVSMLAQQQQ HRFRSLSSRE LRSNTSPVVG SPVNNSSWWG  480
SSNGEPDWGM SSEEALGKLR SSSSFDGDDE PDVSWVQSLV KESTPNEAKE NSKKPTTVEV  540
VTDNAGLEAW IEQMQLDQLI PQHN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.272701e-134leaf| vegetative meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058380001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724397.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A078HCB00.0A0A078HCB0_BRANA; BnaA03g19640D protein
STRINGBo3g035820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]