PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00058083001

Common Name

GSBRNA2T00058083001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 508aa MW: 56192.1 Da PI: 6.113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00058083001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	5.9e-12	341	386	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er RR+++N++f Lr +P+ K++Ka+ L A+ YIk+L GSBRNA2T00058083001 341 NHVQAERLRREKLNQRFYALRATVPNV-----SKMDKASLLGDAISYIKEL 386 6999********************6.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.9E-48	39	221	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.856	337	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-17	340	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.54E-12	340	387	No hit	No description
Pfam	PF00010	1.5E-9	341	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-16	341	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-14	343	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MDSLNTNVPA SMIDALMSSP SSGFWPPQSP ANPSPDSALQ KRLQAVLNGT HEAWTYAIFW 60 TPSYYDYSGE SVLKWGDGIY KGEEADNTRR KRRRMTVAER EHWSIILPEL SSMISDENVS 120 VIEGEDDVEV SDTEWFYMVS MTVSFGSETG LPGKAFATYK PVWVTGSDHI LASGCDRAKK 180 GGDSGLQTIV CIPLDNGVLE LGSTVEIQQN PDLFNKIRVV FSFEGSRDFS GDPNSNSFQP 240 FSTHLENGGG SSTVTVNANL YPNPVYPQTV NYAISPLERA LHSPNRNYPH QIPIDNGELL 300 HSAGDIDGSD HSDIEATVVP GNKQKKKRGR KLANGRKEPL NHVQAERLRR EKLNQRFYAL 360 RATVPNVSKM DKASLLGDAI SYIKELKSRA ENAESERNAI QIQLNKLKEE MAGRNVVCRG 420 GENASEIETA NIDVKILGCD AMVRLESSKR NHPAARLMNA FMDLDVELNH ASISVIHDLM 480 IQQATVKMGS RMYTQDQLRA MLVSKIN*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MDSLNTNVPA SMIDALMSSP SSGFWPPQSP ANPSPDSALQ KRLQAVLNGT HEAWTYAIFW  60
TPSYYDYSGE SVLKWGDGIY KGEEADNTRR KRRRMTVAER EHWSIILPEL SSMISDENVS  120
VIEGEDDVEV SDTEWFYMVS MTVSFGSETG LPGKAFATYK PVWVTGSDHI LASGCDRAKK  180
GGDSGLQTIV CIPLDNGVLE LGSTVEIQQN PDLFNKIRVV FSFEGSRDFS GDPNSNSFQP  240
FSTHLENGGG SSTVTVNANL YPNPVYPQTV NYAISPLERA LHSPNRNYPH QIPIDNGELL  300
HSAGDIDGSD HSDIEATVVP GNKQKKKRGR KLANGRKEPL NHVQAERLRR EKLNQRFYAL  360
RATVPNVSKM DKASLLGDAI SYIKELKSRA ENAESERNAI QIQLNKLKEE MAGRNVVCRG  420
GENASEIETA NIDVKILGCD AMVRLESSKR NHPAARLMNA FMDLDVELNH ASISVIHDLM  480
IQQATVKMGS RMYTQDQLRA MLVSKIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	2e-42	36	223	6	194	Transcription factor MYC3
4rqw_B	2e-42	36	223	6	194	Transcription factor MYC3
4rs9_A	2e-42	36	223	6	194	Transcription factor MYC3
4yz6_A	2e-42	36	223	6	194	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	93	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00058083001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013661962.1	0.0	transcription factor bHLH28-like
Swissprot	Q9LUK7	1e-159	BH028_ARATH; Transcription factor bHLH28
TrEMBL	A0A078HEF5	0.0	A0A078HEF5_BRANA; BnaA09g18200D protein
STRING	Bra017523.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13953	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	1e-162	NACL-inducible gene 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]