PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00057443001

Common Name

GSBRNA2T00057443001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 178aa MW: 20395 Da PI: 10.4347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00057443001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.6e-06	16	44	2	30
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPka 30 r++ n rE+ RR r+++ f L +++ + GSBRNA2T00057443001 16 REKRNLREKERRTRMKDLFCLLSSHVSPT 44 8899*********************9874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.779	14	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.85E-10	14	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-6	16	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MERKREIGEG SSLSLREKRN LREKERRTRM KDLFCLLSSH VSPTRRQLPV PQLIDEATSY 60 MIKMKENVKY LKEKKKSLLG GEVPGKRSEG SSSLLPKLSI HSRDSIIEMN LIIDVSMKRL 120 MLHELMRVFE EEGAQVMTAS LQNLNDRTAC TIIAQAVICR IGIDPSRIEK RVRDIIF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	LREKER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00057443001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022571277.1	1e-122	transcription factor bHLH168-like
Swissprot	Q9XIJ1	4e-88	BH168_ARATH; Transcription factor bHLH168
TrEMBL	A0A078H8R6	1e-124	A0A078H8R6_BRANA; BnaA09g48060D protein
STRING	Bo8g109410.1	2e-88	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	2e-64	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]