PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00056989001 | ||||||||
Common Name | GSBRNA2T00056989001, LOC106386001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 25731.3 Da PI: 9.6776 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97 | 7.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+S+LCdaev++i+fs++gkl+eyss GSBRNA2T00056989001 9 KRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVSLIVFSHKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 102.1 | 7.6e-34 | 84 | 176 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + + + + +++ e+++Lk++ie L+r+qRh+lGedLes+s+keLq+LeqqL++slk+iRs+Kn+l++e++++lq+keke+ een +L k+ GSBRNA2T00056989001 84 DSHVNAQTNWSVEYSRLKAKIELLERNQRHYLGEDLESISIKELQNLEQQLDTSLKHIRSRKNQLMHESLNHLQRKEKEILEENSMLAKQ 173 36677789*********************************************************************************9 PP K-box 98 lee 100 + e GSBRNA2T00056989001 174 IRE 176 975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.184 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-33 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.65E-41 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.8E-30 | 85 | 174 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.994 | 90 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MGRGRVEMKR IENKINRQVT FSKRRAGLLK KAHEISILCD AEVSLIVFSH KGKLFEYSSE 60 SCMEKVLEHY ERYSYAEKQL KVPDSHVNAQ TNWSVEYSRL KAKIELLERN QRHYLGEDLE 120 SISIKELQNL EQQLDTSLKH IRSRKNQLMH ESLNHLQRKE KEILEENSML AKQIRERESI 180 LRTHQNQSEQ QNRSHHVAPQ PQPQLNPYMA SSPFLNMG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in early floral primordia and fades out in cells that will give rise to stamens and carpels. {ECO:0000269|PubMed:18332227, ECO:0000269|PubMed:7824951}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in some of the meristems of arrest-stage broccoli heads. {ECO:0000269|PubMed:9084216}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00056989001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BNADBD | 0.0 | L36926.1 Brassica oleracea (clone pBS85) BoCAL mRNA, complete cds. | |||
GenBank | BOU67454 | 0.0 | U67454.1 Brassica oleracea homeotic protein boical (BoiCAL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013613941.1 | 1e-159 | PREDICTED: transcription factor CAULIFLOWER isoform X2 | ||||
Refseq | XP_013681355.1 | 1e-159 | transcription factor CAULIFLOWER | ||||
Swissprot | Q39375 | 1e-159 | CAL_BRAOT; Transcription factor CAULIFLOWER | ||||
TrEMBL | A0A078HAT6 | 1e-158 | A0A078HAT6_BRANA; BnaC03g56640D protein | ||||
STRING | Bra011021.1-P | 1e-151 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM792 | 25 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26310.1 | 1e-130 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106386001 |
Publications ? help Back to Top | |||
---|---|---|---|
|