PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00056083001 | ||||||||
Common Name | GSBRNA2T00056083001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 176aa MW: 21151.4 Da PI: 9.8137 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.3 | 1.6e-11 | 5 | 144 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 P ++e v +yLk +++++ ++++++ d+y v+P++ + +++ ++ y F++r k++ ++ +sg W+ g+d+ ++s GSBRNA2T00056083001 5 YPPEDETVGYYLKMMLDKRNKWPSNFLRSEDVYCVNPRTHFN-TQEpliLHDGRYLFVNRTKSSG---KT-DGCDSGCWRIMGRDRLIKS 89 5888999*********9999666689***********98742.22222255688****9988654...33.34579*************9 PP NAM 95 k.kgelvglkktLvfy....................kgrapkgektdWvmheyrl 128 + ++e g kk++ f k++++ k Wvm+eyrl GSBRNA2T00056083001 90 EkSEEILGFKKVFRFCekneekpksffkfswekaeeKEKRRARDKRVWVMEEYRL 144 8556669*********7777777666666666554324444456899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.803 | 1 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-9 | 5 | 144 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.97E-23 | 5 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MTMIYPPEDE TVGYYLKMML DKRNKWPSNF LRSEDVYCVN PRTHFNTQEP LILHDGRYLF 60 VNRTKSSGKT DGCDSGCWRI MGRDRLIKSE KSEEILGFKK VFRFCEKNEE KPKSFFKFSW 120 EKAEEKEKRR ARDKRVWVME EYRLASKWKQ DYVICKIRLL NPNPLEFMLS NHVRG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00056083001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624280.1 | 1e-126 | PREDICTED: uncharacterized protein LOC106330344 | ||||
Refseq | XP_013630765.1 | 1e-126 | PREDICTED: uncharacterized protein LOC106336473 | ||||
TrEMBL | A0A078H6D5 | 1e-127 | A0A078H6D5_BRANA; BnaC01g28650D protein | ||||
STRING | Bo1g093090.1 | 1e-126 | (Brassica oleracea) | ||||
STRING | Bo3g081220.1 | 1e-126 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16194 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60240.1 | 2e-67 | NAC family protein |
Publications ? help Back to Top | |||
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