PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055429001
Common NameGSBRNA2T00055429001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 434aa    MW: 49757.5 Da    PI: 6.3486
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055429001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.76.9e-20185237155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r++W +eL ++F++a+e L G+e A+Pk+ile m+v g+t+e+v+SHLQk+R+
  GSBRNA2T00055429001 185 KRRVVWDNELKKKFLDAMEDL-GPE-AVPKKILERMNVVGMTRENVASHLQKHRM 237
                          689******************.887.****************************7 PP
2Response_reg45.93.1e-16121191108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+ d++  ++  l++ l+  +y +v+ + +g +a+++l+++   +D+ ++  + + +d ++l++ei++e  +lpii+ +  ++ + +++
  GSBRNA2T00055429001  12 VLVYDEDFQNLISLEKHLQYFQY-KVTICNEGADAMHMLRNHMntFDIAIIEAQNSAVDIFRLISEIASEI-DLPIIITSKDDSVQSVIN 99 
                          7899999****************.***************888888**********************9988.9***************** PP

                          HHHTTESEEEESS--HHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelv 108
                           +k G+ d+l Kp+ pe+l+
  GSBRNA2T00055429001 100 WMKIGVCDYLIKPIRPEDLR 119
                          *****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.55E-218133IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-219146No hitNo description
SMARTSM004481.5E-610122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.81711126IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-1012119IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.33E-913119No hitNo description
SuperFamilySSF466899.85E-13182241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-19183241IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-19185237IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MLTGKFPEGL RVLVYDEDFQ NLISLEKHLQ YFQYKVTICN EGADAMHMLR NHMNTFDIAI  60
IEAQNSAVDI FRLISEIASE IDLPIIITSK DDSVQSVINW MKIGVCDYLI KPIRPEDLRF  120
IFKHVVKKMQ VGKRVESEEK ATAEKSSSVG DSTIRNPNKR KRSMFIDGQV GEKDQDHVRD  180
STTKKRRVVW DNELKKKFLD AMEDLGPEAV PKKILERMNV VGMTRENVAS HLQKHRMLLN  240
RQKSHNEKDE KKRSLLSPQG GLHSGEGGSN IQFSTQHISN IPHQPFRHHP DGVPVAVSTR  300
NLLMTNQHHL QTSDFTSIEN VEESLIFTEE DAEVSNLAFL FTQKSEEMSL SHLHEPVMAT  360
TMLSNDNQMM NFHEQSILHT HSFPLSLTPS SFLDQKETIM MMNVDEGLQQ WLLNEQEQPN  420
LTDENRFSSI NPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-13181241162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055429001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129772.10.0PREDICTED: putative two-component response regulator-like APRR4
SwissprotQ9FJ161e-92APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A078H5S80.0A0A078H5S8_BRANA; BnaA02g30670D protein
STRINGBra020652.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.14e-88pseudo-response regulator 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]