PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054797001
Common NameGSBRNA2T00054797001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22309.9 Da    PI: 9.4646
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054797001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-161050242
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         +i n+s  + t+ kR++g++KK +ELS+LC+++++ ii+s+
  GSBRNA2T00054797001 10 FIANDSSSKATYKKRKKGLMKKVNELSTLCGINACAIIYSP 50
                         799*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.586149IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-22160IPR002100Transcription factor, MADS-box
CDDcd002668.32E-22285No hitNo description
SuperFamilySSF554551.57E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-161051IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTRKKVKLAF IANDSSSKAT YKKRKKGLMK KVNELSTLCG INACAIIYSP YDSNPEVWPS  60
NSGVQRIISE FRTLPEMDQN KKMVDQETFL RQRIAKASDN LKKQRKDNLE MEMTEVMFQC  120
LIGNMGMFNL NIMDLNDLGY LIDQCLKDVN RRIEILGNSR MELGESSNNV AAEAIQTLPI  180
IHGSARVSRV DVHITF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIANDSSSKATYKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054797001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144622.11e-115PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-93AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A078H7X31e-144A0A078H7X3_BRANA; BnaC02g26190D protein
STRINGBra018490.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-95AGAMOUS-like 80
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]