PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00054768001

Common Name

GSBRNA2T00054768001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GATA

Protein Properties

Length: 576aa MW: 64591.3 Da PI: 8.2055

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00054768001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50	4e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ GSBRNA2T00054768001 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41 **************88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	3.3E-10	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.0E-11	5	45	No hit	No description
CDD	cd00202	1.16E-15	6	53	No hit	No description
PROSITE profile	PS50114	11.2	7	40	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	6.8E-14	7	41	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.2E-12	7	40	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Pfam	PF13919	3.3E-7	238	323	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHS RAEVDDINDH 60 RPPKMMMMNK KIPKRRPYQE NFTVKRTNYE FNNGFKKRTL DELEASNRSS SGSVVSNSES 120 CDQSNAWETT FPSKKRTCVV GRPKAASSVE KLTKDLYSIL QEQQSSCLSG TSEEDLLFEN 180 ESPMVIGHGS VLLRDPHEES EASSLLAESS KSSSMHSAEF VVNKSQRSLN FGCRTKPQVL 240 GRHSLPLCNI DLKDVFNFDE FTEKFTKEEQ QKLMKLLPEV DSVDLPESLR SMFECSQFKE 300 NFSLFQQLVA DGVFQPLSSS SSSSSSGSKL EELKTLAKLA LSDPNKSHLL ESYHMLKEQR 360 KGIQDSVTKS SDNHSLVTIE RPCESLNQNF SETRTVMKSP KEVIKIRSKQ IETKEIIENS 420 VSSFNHMSYG YDIKIPSIDD HVAAPKPKGT CFKQAEAFRN SDHHMMLLLV RKCLRSCIFL 480 RCFQQAWRGG YLSDGTAIMG IKTQAMLEKM RKQVKRMGLV PGINVGDELQ YKTSPCCGSS 540 FQDDVDADVV VFTGEGGNVL SKANKTEDQK SLSFY*

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHS RAEVDDINDH  60
RPPKMMMMNK KIPKRRPYQE NFTVKRTNYE FNNGFKKRTL DELEASNRSS SGSVVSNSES  120
CDQSNAWETT FPSKKRTCVV GRPKAASSVE KLTKDLYSIL QEQQSSCLSG TSEEDLLFEN  180
ESPMVIGHGS VLLRDPHEES EASSLLAESS KSSSMHSAEF VVNKSQRSLN FGCRTKPQVL  240
GRHSLPLCNI DLKDVFNFDE FTEKFTKEEQ QKLMKLLPEV DSVDLPESLR SMFECSQFKE  300
NFSLFQQLVA DGVFQPLSSS SSSSSSGSKL EELKTLAKLA LSDPNKSHLL ESYHMLKEQR  360
KGIQDSVTKS SDNHSLVTIE RPCESLNQNF SETRTVMKSP KEVIKIRSKQ IETKEIIENS  420
VSSFNHMSYG YDIKIPSIDD HVAAPKPKGT CFKQAEAFRN SDHHMMLLLV RKCLRSCIFL  480
RCFQQAWRGG YLSDGTAIMG IKTQAMLEKM RKQVKRMGLV PGINVGDELQ YKTSPCCGSS  540
FQDDVDADVV VFTGEGGNVL SKANKTEDQK SLSFY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00054768001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189261	0.0	AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101446.1	0.0	PREDICTED: GATA transcription factor 27-like isoform X1
Refseq	XP_013693167.1	0.0	GATA transcription factor 27-like isoform X1
Refseq	XP_022543727.1	0.0	GATA transcription factor 27-like isoform X2
Swissprot	Q5PP38	0.0	GAT27_ARATH; GATA transcription factor 27
TrEMBL	A0A078H6N8	0.0	A0A078H6N8_BRANA; BnaA06g35570D protein
STRING	Bra024961.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1606	27	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47140.1	1e-162	GATA transcription factor 27

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]