PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054075001
Common NameGSBRNA2T00054075001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 288aa    MW: 31775.6 Da    PI: 7.4374
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054075001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.7e-19201235135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSBRNA2T00054075001 201 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 235
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.4E-1001287IPR016679Transcription factor, GATA, plant
SuperFamilySSF577165.23E-14194257No hitNo description
PROSITE profilePS5011411.833195231IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-15195249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14199233IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-14200248No hitNo description
PROSITE patternPS003440201226IPR000679Zinc finger, GATA-type
PfamPF003206.6E-17201235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MESVELSLKN INRKEKPDDF SVDDLLDFSN DDVFVEDETK LKAAGVSVSL NDETTLNRSN  60
ELSTHACEDF GSELAVPTDD LAELEWLSNF VEDSYSAPTK KPVWLTGDRR HPVAPVNEGL  120
CFKAPLPVKI RTKRARTGVN VWSLGSSSLT DSSSSSSSSS NPSSPLWLTG AEFLDEKAVK  180
RQKKKKVLEN GGQTQTQTRR CSHCGVQKTP QWRAGPLGAK TLCNACGVRF KSGRLLPEYR  240
PACSPTFSSE LHSNHHRKVI EMRQKKEMST DVDESGLNRT VQAVQSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.194290.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054075001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896271e-103AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149294.10.0PREDICTED: erythroid transcription factor isoform X1
RefseqXP_018515391.10.0PREDICTED: erythroid transcription factor isoform X1
SwissprotQ9SD381e-109GATA6_ARATH; GATA transcription factor 6
TrEMBLA0A078H8X00.0A0A078H8X0_BRANA; GATA transcription factor
STRINGBra038882.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.15e-94GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]