PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00054008001

Common Name

GSBRNA2T00054008001, LOC106377566

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 307aa MW: 34257.5 Da PI: 10.0693

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00054008001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.6	1.2e-16	62	148	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Li+a e++ +l+rg+lk+++Weev++++ ++ ++ +qCk++++ ++k+yk++k ++++ sss++++fd+l+ GSBRNA2T00054008001 62 CWSEKATGVLIDAWGEIHLELSRGNLKQKHWEEVAERVrskeDNGKAPKTDVQCKNRIDTVKKKYKQEKLTSGGS---SSSSWVFFDKLD 148 7***********************************8887778899*******************9984...6678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-24	60	150	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MADDDDQIRS HSDSPDPSSS PPPSGKLTVT VASPAPPQKD PDASPLALLP IRPTGGGGRE 60 DCWSEKATGV LIDAWGEIHL ELSRGNLKQK HWEEVAERVR SKEDNGKAPK TDVQCKNRID 120 TVKKKYKQEK LTSGGSSSSS WVFFDKLDRL IGSTAKISSG GSRGLNLYHQ QGKAETPRFG 180 GKARVTSASF SESKRWPLRR KRNVSDSDSV FEAGVSEDSG DSLPPPPPPL SKRKQGGRNK 240 WRELSRAIMR FGEAYEEIEN AKLRQVVEME KERLKFLKEL EMQRMQFFVK IQLELSRQRE 300 ENGKQQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00054008001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022550959.1	0.0	trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	1e-121	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A078H5U5	0.0	A0A078H5U5_BRANA; BnaC01g37190D protein
STRING	Bra021536.1-P	1e-147	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6262	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-103	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	106377566

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]