PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053938001
Common NameGSBRNA2T00053938001, LOC106374398
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 289aa    MW: 32803.9 Da    PI: 7.0282
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053938001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.6e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd +l+d++++ G+g +W + +++ g++R++k+c++rw++yl
  GSBRNA2T00053938001 14 RGPWSPEEDAKLKDYIEKQGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding41.72.6e-1369111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +++eEd+++  +++  G++ W+ Ia+++  gRt++++k++w++
  GSBRNA2T00053938001  69 GDFSEEEDKIICSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111
                          789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.148962IPR017930Myb domain
SuperFamilySSF466891.24E-2611109IPR009057Homeodomain-like
SMARTSM007172.6E-111364IPR001005SANT/Myb domain
PfamPF002492.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231569IPR009057Homeodomain-like
CDDcd001678.13E-81662No hitNo description
PROSITE profilePS5129420.90963117IPR017930Myb domain
SMARTSM007171.7E-1167115IPR001005SANT/Myb domain
PfamPF002492.4E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2370118IPR009057Homeodomain-like
CDDcd001674.20E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN  60
YLRPNIRHGD FSEEEDKIIC SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAT  120
MAPPPPHHLL AIASSSSSPS SSHYNMTNSL PPYNPSISTN QLITPHQEMM MTMMDQQQQQ  180
LLYQEVMDSL VNSPNNNKLI MSHQEDSQEQ STNKGIMLLS DVRSGSSTTN TVTRVKMEQH  240
DHHHEERSME DYGMEDINHL ISSSCTSSSS NSLWFDENKT EDTFMLYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-23141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053938001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6701180.0KJ670118.1 Brassica napus MYB transcription factor 38 (MYB38.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013669891.10.0transcription factor RAX2
SwissprotQ9SJL71e-140RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A078H3J00.0A0A078H3J0_BRANA; BnaC04g08340D protein
STRINGBo4g031070.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-124MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]