PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053887001
Common NameGSBRNA2T00053887001, LOC106412940
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 190aa    MW: 22163 Da    PI: 6.521
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053887001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.4e-1972126357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          k+ ++t+eql+ Le  F+++++++ e++ +L+k+lgL+ rq+ vWFqNr+a++k+
  GSBRNA2T00053887001  72 KKKKMTNEQLKLLEISFQEEMKLDPERKMKLSKELGLQPRQIAVWFQNRKARWKN 126
                          67899************************************************95 PP
2HD-ZIP_I/II110.21.4e-3572162292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kk+++++eq+klLE sF+ee kL+perK++l++eLglqprq+avWFqnr+AR+k+kqlE+ ye+L++++d + +e++ L++e  +L++ +
  GSBRNA2T00053887001  72 KKKKMTNEQLKLLEISFQEEMKLDPERKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDIICQEKKLLQEELIQLKAMI 161
                          9**************************************************************************************887 PP

          HD-ZIP_I/II  92 k 92 
                          +
  GSBRNA2T00053887001 162 R 162
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1948129IPR009057Homeodomain-like
PROSITE profilePS5007116.30967127IPR001356Homeobox domain
PfamPF000463.8E-1672126IPR001356Homeobox domain
CDDcd000862.47E-1572128No hitNo description
SMARTSM003894.8E-1772131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-2074134IPR009057Homeodomain-like
PRINTSPR000317.9E-598107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000317.9E-5107123IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEEDNMECWS SPFINDQSSS NFIYPFHSFN NVSGTRVVTQ GGPLHEHYYA PSAMVESSFG  60
EASNTNNGYE TKKKKMTNEQ LKLLEISFQE EMKLDPERKM KLSKELGLQP RQIAVWFQNR  120
KARWKNKQLE HLYESLRQEF DIICQEKKLL QEELIQLKAM IRENGASNNK QQTWENACSQ  180
AMQAQFQLN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053887001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565691e-72DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635693.11e-140PREDICTED: homeobox-leucine zipper protein ATHB-22 isoform X2
RefseqXP_013709262.11e-140homeobox-leucine zipper protein ATHB-22
SwissprotQ4PSR78e-77ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLA0A078H8I31e-138A0A078H8I3_BRANA; BnaC04g08710D protein
TrEMBLA0A0D3BRH61e-138A0A0D3BRH6_BRAOL; Uncharacterized protein
STRINGBo4g034490.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.16e-69homeobox protein 22
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]