PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053210001
Common NameGSBRNA2T00053210001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 435aa    MW: 48951.6 Da    PI: 4.8807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053210001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.7e-11385432247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          + WT+eE e l  +vk++G+  Wk I +  +     Rt+ ++k++w+++
  GSBRNA2T00053210001 385 KFWTPEEVEALRAGVKEYGKA-WKDIKNANPavlAERTEVDLKDKWRNL 432
                          67*****************99.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.207379434IPR017930Myb domain
SuperFamilySSF466899.36E-13381433IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-12381434IPR009057Homeodomain-like
SMARTSM007171.3E-4383434IPR001005SANT/Myb domain
CDDcd116602.98E-16385434No hitNo description
PfamPF002496.7E-8387432IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEVMDKWVAE FLIRSQHNPT VSPTHLLSAL RFGDSDDCVT LKVSSVLRDL YDSLLRGSVD  60
EGTLDLLEIL EKLQRSVITE SHKSAYCWTA AECTLRFMWP LDPLDGLFTD ALERIWTKRI  120
GSLKESGSGL VSDELVKWET DLKKAVEDPE MYQRIRESNI RYTAISFLNQ LLKEQWGLLG  180
SSSLEAVAQR RFRNRKGENN VEGDGVRSRE GLNGVDERTG RMESDNIDNS NENGDNRDVE  240
GVGCLEDDGI DKVNEQLAAE EEGTMGSQEQ EHESSLDKGD KMAARELKDY LLEIQRQIDP  300
PSTRQVQEPN NAFDHSVNVT PQPSRVNRTG TSGQDHIETP DNASEKGSSS QGTWSGRVRP  360
RLSSPVPLNV SPLKKINSTV RRPKKFWTPE EVEALRAGVK EYGKAWKDIK NANPAVLAER  420
TEVDLKDKWR NLVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053210001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893550.0AC189355.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120343.10.0PREDICTED: uncharacterized protein LOC103845260 isoform X2
TrEMBLA0A078H6E70.0A0A078H6E7_BRANA; BnaA10g11980D protein
STRINGBra002659.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]