PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00053013001

Common Name

GSBRNA2T00053013001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HRT-like

Protein Properties

Length: 488aa MW: 54749.4 Da PI: 9.7664

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00053013001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.6	1.9e-17	278	308	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil++G C+r+PvkgRKRCeeHKG+R+ GSBRNA2T00053013001 278 VCGVILGNGGRCNRSPVKGRKRCEEHKGQRV 308 7*****************************7 PP
2	HRT-like	47.6	2.9e-15	337	366	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGvil + +C++ Pv+gRKRC HKGmRi GSBRNA2T00053013001 337 CGVILPNMETCSKRPVPGRKRCDYHKGMRI 366 *****************************7 PP
3	HRT-like	26.9	8e-09	407	433	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C ++++ G +C+r+ kg KRC++HK GSBRNA2T00053013001 407 CEATTKSGVPCTRSSPKGSKRCWQHKE 433 99************************7 PP
4	HRT-like	59.4	5.6e-19	453	483	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ ++G vC+r+PvkgRKRCeeHKGmR+ GSBRNA2T00053013001 453 ICGVKVSNGLVCERSPVKGRKRCEEHKGMRV 483 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MNFGDGNFFA VVSTVYKRED YKRTKHDAVF SKWKVLIGSN DWEDFKNGKD GVARYRVQNL 60 PRRSCPGLYE LGVVVIGHDQ ARKLDSDDVL AAYLGQAENV RSRLQSYGRS GAHLRNVSNN 120 NLNHCEAIES PDKKAVTTGL FEDIFIKDGS VLYRWAPMGS KREAEATEGM LLSTFDYAWN 180 KGSNGERRQL DLLMKLGDRE FTRSRKSGIS RVMFPFLRNQ VGIRIKGEKH VLEEERKLSS 240 DVVEEKKKSF GFLASIIKLS QSRPQPVSDK LDEIDGSVCG VILGNGGRCN RSPVKGRKRC 300 EEHKGQRVCR VSPVKNPPQP EIFAGQDYKH EDSDVACGVI LPNMETCSKR PVPGRKRCDY 360 HKGMRINAFL FLLNRTDRER TVKTEKPDPE SPTCNIVEEE EALSRFCEAT TKSGVPCTRS 420 SPKGSKRCWQ HKEKTSGDSL PVKVHPVAGT QVICGVKVSN GLVCERSPVK GRKRCEEHKG 480 MRVIIPS*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MNFGDGNFFA VVSTVYKRED YKRTKHDAVF SKWKVLIGSN DWEDFKNGKD GVARYRVQNL  60
PRRSCPGLYE LGVVVIGHDQ ARKLDSDDVL AAYLGQAENV RSRLQSYGRS GAHLRNVSNN  120
NLNHCEAIES PDKKAVTTGL FEDIFIKDGS VLYRWAPMGS KREAEATEGM LLSTFDYAWN  180
KGSNGERRQL DLLMKLGDRE FTRSRKSGIS RVMFPFLRNQ VGIRIKGEKH VLEEERKLSS  240
DVVEEKKKSF GFLASIIKLS QSRPQPVSDK LDEIDGSVCG VILGNGGRCN RSPVKGRKRC  300
EEHKGQRVCR VSPVKNPPQP EIFAGQDYKH EDSDVACGVI LPNMETCSKR PVPGRKRCDY  360
HKGMRINAFL FLLNRTDRER TVKTEKPDPE SPTCNIVEEE EALSRFCEAT TKSGVPCTRS  420
SPKGSKRCWQ HKEKTSGDSL PVKVHPVAGT QVICGVKVSN GLVCERSPVK GRKRCEEHKG  480
MRVIIPS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During embryogenesis, expressed in the embryo at the late torpedo/cotyledon stage, at the onset of maturation. Not expressed during early stages of seed development or in mature seeds. {ECO:0000269\|PubMed:22226340}.
Uniprot	TISSUE SPECIFICITY: Expressed in vascular tissues of stems, hypocotyls, leaves and flowers. Expressed in the vascular bundles of xylem in shoot parenchyma cells. Expressed in the remnant cytoplasm of differentiated fiber cells and in protoxylem element of parenchymal cells. {ECO:0000269\|PubMed:17991462}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00053013001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013729107.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A078H7M5	0.0	A0A078H7M5_BRANA; BnaC09g33300D protein
STRING	Bo9g126290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2

Link Out ? help Back to Top
Entrez Gene	106432805

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]