PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00052818001

Common Name

GSBRNA2T00052818001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HRT-like

Protein Properties

Length: 485aa MW: 54299.8 Da PI: 9.7187

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00052818001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.6	1.9e-17	278	308	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil++G C+r+PvkgRKRCeeHKG+R+ GSBRNA2T00052818001 278 VCGVILGNGGRCNRSPVKGRKRCEEHKGQRV 308 7*****************************7 PP
2	HRT-like	48.8	1.2e-15	334	364	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil + +C++ Pv gRKRCe HKGmRi GSBRNA2T00052818001 334 TCGVILANMEPCSKRPVLGRKRCEDHKGMRI 364 7*****************************7 PP
3	HRT-like	26.1	1.5e-08	404	430	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C ++++ G +C+r+ kg KRC++HK GSBRNA2T00052818001 404 CEATTKSGGPCTRSSPKGSKRCWQHKE 430 99************************7 PP
4	HRT-like	59.4	5.6e-19	450	480	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ ++G vC+r+PvkgRKRCeeHKGmR+ GSBRNA2T00052818001 450 ICGVKVSNGLVCERSPVKGRKRCEEHKGMRV 480 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MNFGDGSFFA VVPTVYKREE YKRTKHDAVF SKWKILIGSN DWEDFKNGKD GVARYRVQNL 60 PRRSCPGLYE LGVAVIGHDQ ARKLDSDDVL AAYLGQAESV RSRLQSYGRS GAHLRRVNNN 120 NLNDCEAIES PDKKTVTAGL FEDIFFKDGS VVYRWAPMGS KREAEATEGM LLSTFDYAWN 180 KGSNGERRQL DLLIKLGDRE FMRSRKSGIS RVLFPFLRNQ VGIRIKGEKH VLEEERKLSS 240 DVVEEKKKSF GFLASIIKLS RSRPQPVSDK LDEIDGSVCG VILGNGGRCN RSPVKGRKRC 300 EEHKGQRVCR VSPVKQQPES SVGQDYNHED SDVTCGVILA NMEPCSKRPV LGRKRCEDHK 360 GMRINAFLFL LNRTDREKTV ETEKSDPEPP TGNIAEEEAL SRFCEATTKS GGPCTRSSPK 420 GSKRCWQHKE KTSGDSLPVK FHPVAGTQVI CGVKVSNGLV CERSPVKGRK RCEEHKGMRV 480 IIPS*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MNFGDGSFFA VVPTVYKREE YKRTKHDAVF SKWKILIGSN DWEDFKNGKD GVARYRVQNL  60
PRRSCPGLYE LGVAVIGHDQ ARKLDSDDVL AAYLGQAESV RSRLQSYGRS GAHLRRVNNN  120
NLNDCEAIES PDKKTVTAGL FEDIFFKDGS VVYRWAPMGS KREAEATEGM LLSTFDYAWN  180
KGSNGERRQL DLLIKLGDRE FMRSRKSGIS RVLFPFLRNQ VGIRIKGEKH VLEEERKLSS  240
DVVEEKKKSF GFLASIIKLS RSRPQPVSDK LDEIDGSVCG VILGNGGRCN RSPVKGRKRC  300
EEHKGQRVCR VSPVKQQPES SVGQDYNHED SDVTCGVILA NMEPCSKRPV LGRKRCEDHK  360
GMRINAFLFL LNRTDREKTV ETEKSDPEPP TGNIAEEEAL SRFCEATTKS GGPCTRSSPK  420
GSKRCWQHKE KTSGDSLPVK FHPVAGTQVI CGVKVSNGLV CERSPVKGRK RCEEHKGMRV  480
IIPS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During embryogenesis, expressed in the embryo at the late torpedo/cotyledon stage, at the onset of maturation. Not expressed during early stages of seed development or in mature seeds. {ECO:0000269\|PubMed:22226340}.
Uniprot	TISSUE SPECIFICITY: Expressed in vascular tissues of stems, hypocotyls, leaves and flowers. Expressed in the vascular bundles of xylem in shoot parenchyma cells. Expressed in the remnant cytoplasm of differentiated fiber cells and in protoxylem element of parenchymal cells. {ECO:0000269\|PubMed:17991462}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00052818001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013667009.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A078H5M1	0.0	A0A078H5M1_BRANA; BnaA10g10900D protein
STRING	Bra002792.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]