PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052675001
Common NameGSBRNA2T00052675001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 413aa    MW: 47540.2 Da    PI: 7.2401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052675001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05148172123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y+C    C+k F ++s LkrH   H
  GSBRNA2T00052675001 148 YVCDypGCDKKFLDSSKLKRHWLIH 172
                          89*******************9988 PP
2zf-C2H220.11.7e-06178202123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++C+   Cgk Fs   nL++H++tH
  GSBRNA2T00052675001 178 FVCTyqGCGKAFSLDFNLRSHMKTH 202
                          89**********************9 PP
3zf-C2H212.10.00062208233123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          + Cp   Cgk++   + Lk+H    H
  GSBRNA2T00052675001 208 HICPysGCGKRYAYEYKLKNHVAAyH 233
                          68*******************87666 PP
4zf-C2H213.30.00024272297123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          y Cp   C+k + + + Lk H+++ H
  GSBRNA2T00052675001 272 YACPyeGCDKDYIHEYKLKLHLKReH 297
                          89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-13114145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.013119143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533119148IPR007087Zinc finger, C2H2
PROSITE patternPS000280121143IPR007087Zinc finger, C2H2
SuperFamilySSF576678.25E-9122172No hitNo description
Gene3DG3DSA:3.30.160.601.9E-14146168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.404148177IPR007087Zinc finger, C2H2
SMARTSM003550.0025148172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150172IPR007087Zinc finger, C2H2
SuperFamilySSF576679.72E-14159213No hitNo description
Gene3DG3DSA:3.30.160.605.8E-19169205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.1E-4178202IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.196178207IPR007087Zinc finger, C2H2
PROSITE patternPS000280180202IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-6206229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012208233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210233IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-8269294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.11E-5270297No hitNo description
SMARTSM003550.013272297IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286272302IPR007087Zinc finger, C2H2
PROSITE patternPS000280274297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MTFHITLCFL CVFVMILSFI VGVGAGVHVF NSYKQKTKRY QYQNNPFERR PILKPSKSSP  60
AVRWIKDWVP QDIVATGAKC YLRKWVTEET VKRLKEKEKE PSTDVSDPDP PEPTSEILFL  120
CSYDGCGKIF FDVSALRKHS HIHGERQYVC DYPGCDKKFL DSSKLKRHWL IHTGARDFVC  180
TYQGCGKAFS LDFNLRSHMK THLQENYHIC PYSGCGKRYA YEYKLKNHVA AYHEKNGAGE  240
TPTFTPPAEK VSRTPKIPSA TVYGSASLER PYACPYEGCD KDYIHEYKLK LHLKREHLPE  300
ENNNTPNKHD LEEGSDQDFY RKHASNGKSQ THRQQSRAKP DMRTPPAKAL KKGSTSSPAK  360
ARMDKKPWQE KETCEGEDSE ETEEDRENVD DGWRFVGNNE EEDDDEETED EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C9e-351212328117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.129521e-163microspore| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052675001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411880.0AC241188.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH120G08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013683312.10.0zinc finger transcription factor YY1-like
SwissprotQ2V3L30.0YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A078H1W90.0A0A078H1W9_BRANA; BnaC03g16080D protein
STRINGBo3g023850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-179C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]