PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00052222001

Common Name

GSBRNA2T00052222001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 164aa MW: 19115.3 Da PI: 9.7244

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00052222001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.8	0.00011	4	50	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 r+ n rE+ RR r+++ f L +++ + +l + +A+ Y+ + GSBRNA2T00052222001 4 REQRNLREKERRTRMKHLFIILSSHVSPT-----HRLPVPQLIDQATSYMIQ 50 7789*********************9885.....355555666666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.626	2	51	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-11	3	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-6	4	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MSPREQRNLR EKERRTRMKH LFIILSSHVS PTHRLPVPQL IDQATSYMIQ LKEKVNYLRE 60 KKMSLLGEMG NYSERSSSLL PKLSIYSRDS TIEMNLIMDL NMKRVMLHEL VSVFEEEGAQ 120 VINANLQNLN DRMIIYTIVG QAIICRIGID PSRIEERVRD LIF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	13	LREKER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00052222001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603852.1	1e-115	PREDICTED: uncharacterized protein LOC106311173
Refseq	XP_013682362.1	1e-115	transcription factor bHLH167
Swissprot	F4I4E1	9e-86	BH167_ARATH; Transcription factor bHLH167
TrEMBL	A0A078JK29	1e-114	A0A078JK29_BRANA; BnaCnng49830D protein
TrEMBL	A0A0D3DY42	1e-114	A0A0D3DY42_BRAOL; Uncharacterized protein
STRING	Bo8g109420.1	1e-115	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	4e-88	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106387099

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]