PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052078001
Common NameGSBRNA2T00052078001, LOC106432931, LOC106432951
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 168aa    MW: 18588.1 Da    PI: 10.2031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052078001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-1984138155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIr+ +   g+r r +lg+f+taeeAa a+++a+ +l g
  GSBRNA2T00052078001  84 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAVQLIG 138
                          59********.**********54433367**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.4E-351166IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.82E-2384145No hitNo description
PfamPF008472.3E-1385138IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1985147IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-2785146IPR001471AP2/ERF domain
SMARTSM003801.5E-3085152IPR001471AP2/ERF domain
PROSITE profilePS5103221.54985146IPR001471AP2/ERF domain
PRINTSPR003672.3E-118697IPR001471AP2/ERF domain
PRINTSPR003672.3E-11112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRIVRISVT DAEATDSSSD EDTEEPCRET TTTAQVRRRR GKRLVKEIVI DPPDSDDNRD  60
ACKTRFKIRI PAEFLKATAE GGKKKFRGVR QRPWGKWAAE IRCGRALKGR RDRLWLGTFD  120
TAEEAALAYD NAAVQLIGPH APTNFSFPAE SQEVKMVAGA SAVARVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16851451471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.67500.0flower| leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052078001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127848.11e-119PREDICTED: ethylene-responsive transcription factor ERF070-like
RefseqXP_013729233.11e-119ethylene-responsive transcription factor ERF070-like
RefseqXP_013729255.11e-119ethylene-responsive transcription factor ERF070-like
SwissprotQ9C9951e-81ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A078JHW31e-117A0A078JHW3_BRANA; BnaA02g35550D protein
TrEMBLA0A398ADW51e-117A0A398ADW5_BRACM; Uncharacterized protein
TrEMBLM4CUR81e-117M4CUR8_BRARP; Uncharacterized protein
STRINGBra007963.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.19e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]