PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00051488001 | ||||||||
Common Name | GSBRNA2T00051488001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 154aa MW: 18024.4 Da PI: 10.8527 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 69 | 7.4e-22 | 42 | 101 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 l r+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L++e+++l+ ++++l+ e+ GSBRNA2T00051488001 42 LSRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENASLREEINKLRSQCEELTFEN 101 78*****************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-18 | 39 | 103 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.1E-20 | 42 | 101 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-16 | 42 | 98 | No hit | No description |
CDD | cd14702 | 1.98E-15 | 44 | 94 | No hit | No description |
PROSITE profile | PS50217 | 12.358 | 44 | 104 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-11 | 44 | 98 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 46 | 61 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MELTLKVGRV LLMVQVKEVM QTLKITLDLD NTTGRMHLES CLSRQRRKQS NRESARRSRL 60 RKQAECDELA QRAEVLNEEN ASLREEINKL RSQCEELTFE NTSLNSRTNF YHSLHLKALT 120 WTRTSKNHQT SLKNTSSSNN NNNTRRFFAN RWL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 46 | RMHLESCLSRQRR |
2 | 55 | 61 | RRSRLRK |
3 | 55 | 62 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.22546 | 2e-31 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00051488001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353164 | 8e-36 | AK353164.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-I15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022557789.1 | 2e-54 | bZIP transcription factor 16-like | ||||
TrEMBL | A0A078H5N5 | 1e-104 | A0A078H5N5_BRANA; BnaC04g44430D protein | ||||
STRING | Bo4g183320.1 | 7e-62 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM26839 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 5e-34 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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