PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00051145001 | ||||||||
Common Name | GSBRNA2T00051145001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 128aa MW: 14552.8 Da PI: 7.3027 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 80.8 | 2.1e-25 | 13 | 112 | 2 | 101 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 C++C ++ C+++C +a yfp+e +++++++ klFG++n++++++ +++e+ + ++ss++ e+ a+++d ++G +gvi+kl ++++ ++ GSBRNA2T00051145001 13 CCVCIEENKICTRKCEFAAYFPNEVQSDYEAATKLFGTTNIISMMNLASHEQNHLLASSILKEGAAWTDDNIRGGYGVIQKLMWEIKLHE 102 ****************************************************************************************** PP DUF260 92 aelallkeel 101 a l+++k+++ GSBRNA2T00051145001 103 AYLSERKKKI 112 ****999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.145 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.9E-21 | 13 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MEALRTDSKR GCCCVCIEEN KICTRKCEFA AYFPNEVQSD YEAATKLFGT TNIISMMNLA 60 SHEQNHLLAS SILKEGAAWT DDNIRGGYGV IQKLMWEIKL HEAYLSERKK KISEEKKQIV 120 LLLNQYI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00051145001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607622.1 | 4e-90 | PREDICTED: LOB domain-containing protein 5-like | ||||
Swissprot | Q9C8V8 | 3e-38 | LBD5_ARATH; LOB domain-containing protein 5 | ||||
TrEMBL | A0A078JEG2 | 1e-89 | A0A078JEG2_BRANA; BnaUnng01320D protein | ||||
STRING | Bo9g027690.1 | 1e-55 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12282 | 14 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G36000.1 | 1e-40 | LOB domain-containing protein 5 |
Publications ? help Back to Top | |||
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