PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00050907001
Common NameGSBRNA2T00050907001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 377aa    MW: 44265.4 Da    PI: 6.0358
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00050907001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.92.7e-088216056128
                  NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy.......kgrapkgektdWvmheyrl 128
                          ++ yf + ++++ + gk    +  sg W+   +dk ++++ +g+  g kk+L f        ++++++  +  Wvm+eyrl
  GSBRNA2T00050907001  82 SDNYFIFVKRRTDSCGKTDGSV--SGCWRIMARDKLIKCReTGRILGFKKILKFCekdnkrsEEQEEEEDEIIWVMEEYRL 160
                          3456666666666677666654..8*************9877888**********666554434555556788******98 PP
2NAM41.34.7e-132163489128
                  NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                          Ptd e++++yLk  v+ ++   ++++++ ++y v Pw +  p + + + +   yfF++r +++    r++   + g W+   +d+ ++sk
  GSBRNA2T00050907001 216 PTD-EIISYYLKMCVDVQNDWPTHFLQSEQVYGVVPWMIvdPDQSSVDLQeGPYFFVNRTESS---GRTTDGCDGGCWRIMRQDRVITSK 301
                          555.89*********9999555578**************43333333333156****998865...467777789*************** PP

                  NAM  96 kgelvglkktLvfy..............kgrapkgektdWvmheyrl 128
                          ++++ g k+ + f               ++ + +  k +Wvm+eyrl
  GSBRNA2T00050907001 302 GNKVLGFKRLFKFCvkekkepvykfwadEKYKVNEFKVTWVMDEYRL 348
                          *************977776666666665456666679********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.88922176IPR003441NAC domain
PfamPF023657.2E-651160IPR003441NAC domain
SuperFamilySSF1019412.75E-1480174IPR003441NAC domain
PROSITE profilePS5100517.868207364IPR003441NAC domain
SuperFamilySSF1019411.57E-20215362IPR003441NAC domain
PfamPF023659.9E-9217348IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEEYVPYDIP GERERSRSPK NKQIGMKIDN GDVDGLEYLS DELFRNFHDG QASGSGADQT  60
DPTGFNDFTP DFNSFSDFTL NSDNYFIFVK RRTDSCGKTD GSVSGCWRIM ARDKLIKCRE  120
TGRILGFKKI LKFCEKDNKR SEEQEEEEDE IIWVMEEYRL VDKWKHDQVI CKIRDLLQHE  180
VTTLLAKHFS FLPKWIRPFS QKDFMPRWDL CVPNLPTDEI ISYYLKMCVD VQNDWPTHFL  240
QSEQVYGVVP WMIVDPDQSS VDLQEGPYFF VNRTESSGRT TDGCDGGCWR IMRQDRVITS  300
KGNKVLGFKR LFKFCVKEKK EPVYKFWADE KYKVNEFKVT WVMDEYRLAK KKEQGKVICR  360
ISLLFPSPLT SHLEQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00050907001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632799.10.0PREDICTED: uncharacterized protein LOC106338342
TrEMBLA0A078JKH40.0A0A078JKH4_BRANA; BnaCnng48900D protein
TrEMBLA0A3P6C3L50.0A0A3P6C3L5_BRAOL; Uncharacterized protein
STRINGBo4g084880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1822159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-53NAC domain containing protein 23
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]