PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00050310001
Common NameGSBRNA2T00050310001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 396aa    MW: 42083.3 Da    PI: 5.4792
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00050310001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.56e-23288350163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++e+kr++rkq+NRe+ArrsR+RK+ae++eL+++++ L +eN +L+ e+++lk ++++l+se+
  GSBRNA2T00050310001 288 DREIKRQKRKQSNRESARRSRLRKQAECDELAQRAELLNEENATLRAEINRLKSQCDELTSEN 350
                          689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-261101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.5E-40141257No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-17281347No hitNo description
SMARTSM003381.1E-21288352IPR004827Basic-leucine zipper domain
PfamPF001701.8E-20289350IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.059290353IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-11291347No hitNo description
CDDcd147024.60E-25293344No hitNo description
PROSITE patternPS000360295310IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MASNEMEKSS KEKEPTTPPP PPPSSQEPSS AVSAGMATPD WSGFQAYSPM PPHGFVASSP  60
QPHPYMWGVQ HMNMMPPYGT PPHPYVAMYP PGGMYGHPSM PPGSYPYSPY AMPSPNGMTE  120
ASGNTTGGTE GGDAKQSEVK EKLPIKRSRG SLGSLNMITG KNNEPGKNSG ASANGAYSKS  180
GESASDGSSE GSDANSQNGS GSGQERKDEN GDSANAPRNG TPVSQTVPIM PMPAAGPPTN  240
LNIGMEYWGA PTSAAIPGMH GKASAPVPGV AAPVSRDGGH SQPWLQDDRE IKRQKRKQSN  300
RESARRSRLR KQAECDELAQ RAELLNEENA TLRAEINRLK SQCDELTSEN TSLKDQLLSF  360
PSLEGINMDK DDQEPETYQT GVTERKADDT YKSST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304310RRSRLRK
2304311RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.225460.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00050310001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935770.0AB493577.1 Arabidopsis thaliana At2g35530 mRNA for hypothetical protein, partial cds, clone: RAAt2g35530.
GenBankBT0220550.0BT022055.1 Arabidopsis thaliana At2g35530 gene, complete cds.
GenBankBT0264410.0BT026441.1 Arabidopsis thaliana At2g35530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143660.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A078GZ090.0A0A078GZ09_BRANA; BnaA05g08520D protein
STRINGBra005335.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.10.0basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]