PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049948001
Common NameGSBRNA2T00049948001, LOC106404993
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 199aa    MW: 23226 Da    PI: 4.5697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049948001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.41.6e-2081401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lp+GfrF+Ptd e+ +++L++k+ +++++  +v +e+ di++  P+dLp   + +e++wyf++++   +     +    ++++Wk+ g++
  GSBRNA2T00049948001   8 LPVGFRFRPTDCEISKYFLTRKALEQRMRGPNVPEEChDIFSRRPRDLPG--YPRETHWYFYCRKLDGQV----TYN--SHSIWKQIGEE 89 
                          79****************************99999999***********4..34789******9876543....333..3579******* PP

                  NAM  90 kevlsk..kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128
                          + vl+   +++lvg+k+ ++f             ++ ++ + +W+m+e++l
  GSBRNA2T00049948001  90 TGVLDPknNDTLVGIKRPFTFVdhkeepddilLSDEDEPPQYNWFMDEFSL 140
                          ****98666677**********766555554436777888*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-267157IPR003441NAC domain
PROSITE profilePS5100528.0958157IPR003441NAC domain
PfamPF023653.7E-149140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEPKHKALPV GFRFRPTDCE ISKYFLTRKA LEQRMRGPNV PEECHDIFSR RPRDLPGYPR  60
ETHWYFYCRK LDGQVTYNSH SIWKQIGEET GVLDPKNNDT LVGIKRPFTF VDHKEEPDDI  120
LLSDEDEPPQ YNWFMDEFSL PLTISETDWV VCHVFRKNNE PESEEEGENE EKETVKAESL  180
DLLMEKDGNV LPPSPSPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049948001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325430.0AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590909.11e-146PREDICTED: protein ATAF2-like
RefseqXP_013701074.11e-146NAC domain-containing protein 104-like
TrEMBLA0A078FEP11e-144A0A078FEP1_BRANA; BnaC06g13440D protein
TrEMBLA0A0D3CT731e-144A0A0D3CT73_BRAOL; Uncharacterized protein
STRINGBo6g064960.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-79NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]