PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049063001
Common NameGSBRNA2T00049063001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 566aa    MW: 63897.2 Da    PI: 5.0639
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049063001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3367.42.5e-112373801351
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          e+l++rmwkd+++lkr+ker+k      ++   +++ +k +eqa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd+
  GSBRNA2T00049063001  37 EDLERRMWKDRVRLKRIKERTKIDS---SQ--AKETPKKVSEQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDN 121
                          89******************99633...33..456678**************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                          +raWWkekv+fd+ngpaai+ky+ ++l++++++++    ++++  l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPWWP+G+e+w
  GSBRNA2T00049063001 122 IRAWWKEKVKFDKNGPAAIAKYEEECLAFGKSDGD----RNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPSGDEEW 207
                          ******************************88888....67899********************************************** PP

                          HHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX..... CS
                 EIN3 181 wgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss..... 265
                          w +lgl+k q+ ppykkphdlkk+wkv+vLtavi+hmsp+i++i+               + s+++l+vlnqee+++ + s+++      
  GSBRNA2T00049063001 208 WVKLGLAKGQS-PPYKKPHDLKKMWKVGVLTAVINHMSPDIAKIK---------------RHSAIWLAVLNQEESLIPQPSSDNGasnvt 281
                          ***********.9*****************************995...............6799***************99994344577 PP

                          ...XXXX....XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XX CS
                 EIN3 266 ...slrk....qspkvtlsceqkedvegkkeskikhvqavktta.........gfpvvrkrkkkpsesakvsskevsrtcqssqfrgset 339
                                +    +++++++++++++dv+g++e + + ++++++++         + ++vr ++k +++++    +  + t q+++ ++ e+
  GSBRNA2T00049063001 282 ethR--RgnnaERRRTVINSDSDYDVDGREEASGSVSSKDNRRKqtqkeqpaaTSQTVRDQDKSEKHRRRKRPR-RTVTQQEEEQPETEQ 368
                          7540..3344588899999********77777777777777766777777776555555555333333333333.4568888888899** PP

                          XXXXXXXXXXXX CS
                 EIN3 340 elifadknsisq 351
                          +++++d+n+++ 
  GSBRNA2T00049063001 369 RIVLPDMNHVDA 380
                          ********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.8E-11137254No hitNo description
Gene3DG3DSA:1.10.3180.102.2E-52157267IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.01E-48161267IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGGGDLPISV TDIRMENEPG DDNVAEIDVS DEEIDAEDLE RRMWKDRVRL KRIKERTKID  60
SSQAKETPKK VSEQAQRKKM SRAQDGILKY MLKLMEVCKV RGFVYGIIPE KGKPVSGSSD  120
NIRAWWKEKV KFDKNGPAAI AKYEEECLAF GKSDGDRNSQ FVLQDLQDAT LGSLLSSLMQ  180
HCDPPQRKYP LEKGTPPPWW PSGDEEWWVK LGLAKGQSPP YKKPHDLKKM WKVGVLTAVI  240
NHMSPDIAKI KRHSAIWLAV LNQEESLIPQ PSSDNGASNV TETHRRGNNA ERRRTVINSD  300
SDYDVDGREE ASGSVSSKDN RRKQTQKEQP AATSQTVRDQ DKSEKHRRRK RPRRTVTQQE  360
EEQPETEQRI VLPDMNHVDA PLLEYNINGT THHQEEGVLE PNIALGPEEN SLEMVIPEFD  420
NNYTYLPPVS GQAMIPVEER PMLYGPNTNQ ELQFGSGYNF YNPSAVFVHN QEEDLIHTQI  480
EMNPQAPPHN GGFEAPGGVL QPHNLLGNED SVTGRDLPPQ FQSDQDKLLD SNILSPFSDL  540
AFDSNTFYSG FDSYGVDDHL SWFGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-661602769140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049063001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022560533.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A078FGC50.0A0A078FGC5_BRANA; BnaC06g23450D protein
STRINGBo6g087550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  4. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  5. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]