PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00048621001

Common Name

GSBRNA2T00048621001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 455aa MW: 50856.6 Da PI: 4.6721

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00048621001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.8e-12	251	292	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + N++f+ L++l+P++ +K++ a+i+ +A++YIk+L GSBRNA2T00048621001 251 TERERRVHFNDRFSDLKSLIPNP-----TKNDRASIVGEAIDYIKEL 292 59*******************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.596	243	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	245	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-8	249	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-12	251	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-9	251	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.54E-11	252	297	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MENLNTDFVT NAEERENLYE EEMACFDSAE VTAESGAGPQ PPPPQTIVAG STSNSNCSVD 60 VEDLPEFHLS PQDCPPQPSS TPLQFHINPL PPCDNQYQIH QMSHDQLQQQ HANWDNGYQD 120 FVNLGPNSST TPDLLSLLHL PRCSLPQSML PNSFSDIMSS SSAAAVMYDP LFHLNFPLQT 180 RDQSQQRNSS CFLGVEDQIQ MDANGGGGGI NMMYYEGDNN NDGFDNGVIE FSSGGNNRKG 240 RGSGKSRTFP TERERRVHFN DRFSDLKSLI PNPTKNDRAS IVGEAIDYIK ELLRTIEDLK 300 MLVEKKKFGR FRSKKRARVG GEEEEEEEEG DNVVYRPKSE GDQSCFSNNK ALRCSWLKRK 360 SKVTEVDVRI IDDEVTIKVV QKKKINCLLF TTRVLDQLQL DLHHVAGGQI GEHYSFLFNT 420 KICEGSCVYA SGIADTVMEV VEKQYMEAVP ANGY*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MENLNTDFVT NAEERENLYE EEMACFDSAE VTAESGAGPQ PPPPQTIVAG STSNSNCSVD  60
VEDLPEFHLS PQDCPPQPSS TPLQFHINPL PPCDNQYQIH QMSHDQLQQQ HANWDNGYQD  120
FVNLGPNSST TPDLLSLLHL PRCSLPQSML PNSFSDIMSS SSAAAVMYDP LFHLNFPLQT  180
RDQSQQRNSS CFLGVEDQIQ MDANGGGGGI NMMYYEGDNN NDGFDNGVIE FSSGGNNRKG  240
RGSGKSRTFP TERERRVHFN DRFSDLKSLI PNPTKNDRAS IVGEAIDYIK ELLRTIEDLK  300
MLVEKKKFGR FRSKKRARVG GEEEEEEEEG DNVVYRPKSE GDQSCFSNNK ALRCSWLKRK  360
SKVTEVDVRI IDDEVTIKVV QKKKINCLLF TTRVLDQLQL DLHHVAGGQI GEHYSFLFNT  420
KICEGSCVYA SGIADTVMEV VEKQYMEAVP ANGY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00048621001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022575047.1	0.0	transcription factor bHLH10-like isoform X2
Swissprot	Q84TK1	0.0	BH010_ARATH; Transcription factor bHLH10
TrEMBL	A0A078FCY4	0.0	A0A078FCY4_BRANA; BnaA05g11520D protein
STRING	Bra018270.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	1e-171	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]