PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048529001
Common NameGSBRNA2T00048529001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 237aa    MW: 25340.5 Da    PI: 8.7302
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048529001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.21.6e-39201191100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l
  GSBRNA2T00048529001  20 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSL 109
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          ++el ++++e
  GSBRNA2T00048529001 110 QSELTTVRTE 119
                          ****999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.18919120IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-4020117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGIRRHVAVP PGTTLNTVTP CAACKLLRRR CAEECPFSPY FSPHEPHKFA AVHKVFGASN  60
VSKMLLEVGE SQRGDAANSL VYEANLRLRD PIYGCMGAIS ALQHHIQSLQ SELTTVRTEI  120
LRHKYREAAT ITSLQNNNNN NFNNTTTSVS DHAALAASIL LPPPPPPPPP PRPPRLLSSQ  180
PAPPPTPPAS LPSPSMVVSS SSSNSSATNS IYNPPPSSTA GYSNSLSSDN NVHYFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-41131314122LOB family transfactor Ramosa2.1
5ly0_B2e-41131314122LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048529001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144310.11e-171PREDICTED: LOB domain-containing protein 13
RefseqXP_013752426.11e-171LOB domain-containing protein 13
SwissprotQ9AT611e-113LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A078FBI41e-169A0A078FBI4_BRANA; BnaA05g12100D protein
TrEMBLA0A397Z9K11e-169A0A397Z9K1_BRACM; Uncharacterized protein
TrEMBLM4DP791e-169M4DP79_BRARP; Uncharacterized protein
STRINGBra018320.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19272781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.19e-97LOB domain-containing protein 13
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]