PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048280001
Common NameGSBRNA2T00048280001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 282aa    MW: 32115.6 Da    PI: 9.5165
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048280001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.3e-114289153
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                         s+ykGV  ++++g W A+I+       +kr++lg+f +  eAa a++ a  kl
  GSBRNA2T00048280001 42 SKYKGVVEHHRNGHWGAQIYID-----HKRIWLGTFKSSVEAAMAYDSASIKL 89
                         89****99999*******9993.....4*******************998776 PP
2B367.81.5e-21173253173
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                          f k ltpsdv+k++rlv+pk++a ++        +g+  e++++++ d++ ++W+++++y+ +s+++v+t+GWk+Fvk  +
  GSBRNA2T00048280001 173 FRKGLTPSDVGKLNRLVIPKRHAVKYlpfinereEGEIVEDVEVVFFDKTMKQWKFRYCYWTSSQSFVFTSGWKRFVKTEN 253
                          7899*************************998885566699*************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-1342102IPR016177DNA-binding domain
CDDcd000185.21E-2042101No hitNo description
PfamPF008476.0E-74289IPR001471AP2/ERF domain
SMARTSM003802.3E-1343107IPR001471AP2/ERF domain
PROSITE profilePS5103216.46343101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-1443102IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-24171253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-21172253IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-18172250No hitNo description
PfamPF023621.4E-18173253IPR003340B3 DNA binding domain
SMARTSM010192.0E-11173268IPR003340B3 DNA binding domain
PROSITE profilePS508639.389173281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTETSTSSNP VLPLKKRKRP VDDTTDNVLA VATKKVAPLG NSKYKGVVEH HRNGHWGAQI  60
YIDHKRIWLG TFKSSVEAAM AYDSASIKLG SFDANCHRNF PLNASTVHEP NFQKGYTTEA  120
VLEMIKDSSY QQKFKDYLSL PFHNVASINL VGSERVQGDQ DSTQYCLTCA ELFRKGLTPS  180
DVGKLNRLVI PKRHAVKYLP FINEREEGEI VEDVEVVFFD KTMKQWKFRY CYWTSSQSFV  240
FTSGWKRFVK TENFVNSKLK EEETKSVENK GGFMLFGVKI Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-221722541392DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11319LKKRKRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048280001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013709497.20.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-106RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A078JKD80.0A0A078JKD8_BRANA; BnaC05g51390D protein
STRINGBra030476.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-100RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]