PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048184001
Common NameGSBRNA2T00048184001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 402aa    MW: 43416.1 Da    PI: 6.5262
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048184001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_160.14.5e-19295357163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq NReAA+rsR+RK+ae ++L++  ++L+aeN +L+ e+++lk + ++l+se+
  GSBRNA2T00048184001 295 ERELKRQRRKQTNREAAQRSRLRKEAEFDQLAQYTEVLSAENASLRAEMNRLKSQREELTSEN 357
                          89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.3E-27199IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.9E-26136262No hitNo description
Gene3DG3DSA:1.20.5.1707.2E-15288354No hitNo description
PfamPF001701.0E-16295357IPR004827Basic-leucine zipper domain
SMARTSM003388.7E-16295359IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.587297360IPR004827Basic-leucine zipper domain
CDDcd146914.21E-16297353No hitNo description
SuperFamilySSF579591.62E-9298354No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MANSEMEKPS KEKELKQPSS SSAPPPSQEP SSSVSAGPDW SGFQASSAPM QPHGFVTSSP  60
QPHPYMWRVQ HMMPPYGTPP HPYVTMYPPG GMYAHPSMPP GSYPYSPMPS PNGVTEASGN  120
TTGGTEGDSK RSDVKEKLPI RRSKRILSMM KGKNNEPGKN SGASANVAYS KRHVTFLDCI  180
GESDSDGSSE GSDANYQIDS GSSQDGKDAS ENGGSANGLQ NGSVGTPLPT VSQKVPIMPN  240
TAPGVPVPPT NLNIGMGYWG APIPGMHGKV STPVPGVFAQ MSRDGGHSQP WLQEERELKR  300
QRRKQTNREA AQRSRLRKEA EFDQLAQYTE VLSAENASLR AEMNRLKSQR EELTSENTSL  360
KDLLLSFPPL EGINMDKDDQ EPDTIQTGFT ETKFVSYKDS T*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048184001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734294.10.0bZIP transcription factor 16-like isoform X2
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A078JGH20.0A0A078JGH2_BRANA; BnaA03g56410D protein
STRINGBra023012.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-161basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]