PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048159001
Common NameGSBRNA2T00048159001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1034aa    MW: 119411 Da    PI: 10.6107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048159001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.2e-1851137190
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f k  + +d+l +gr +l+ +f++++g+ k++   +tl  ++g +W+v+l+ ++++++  l++GWkeF+kangLk+gD ++++  + +++
  GSBRNA2T00048159001  51 FMKLKLAHDSLIRGRQYLSVPFMRANGMTKPG--LITLVGKDGVKWKVNLKEEGSGSALCLGTGWKEFAKANGLKTGDYFTLESAW-KNE 137
                          778888999*****************999766..7***************88888888************************9666.444 PP
2B347.92.5e-151882671197
                          HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           k + l++p  f+++++g +e   + ++++  s  +Wevk+  ++++ r  lt+GWkeF+ a++L+ gD+++F+ ++++ f  +v+++
  GSBRNA2T00048159001 188 VKACTLTIPVAFLKHIEGTNEH-HKAKMRSdASKITWEVKI--ENGR-R--LTNGWKEFALAHDLRIGDILIFRQEKDMAF--HVTLL 267
                          56789********888766544.467777658889******..6666.4..9**********************7776777..77665 PP
3B343.26.8e-14657744197
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ffk l     + s+ l++p  f+ ++  g  ++e+ t +l++  s  +Wevk+  + + +   lt+GWkeF+ a++L+ gD+++F+ +++
  GSBRNA2T00048159001 657 FFKPL--LPGFHSH-LTIPVAFFLKYieG--TNEHHTAKLRSdASKITWEVKI--EDG-Q--KLTDGWKEFAIAHDLRIGDILMFRQEKD 736
                          66666..5667777.***********743..3466699999868889******..333.2..4***********************7776 PP

                          SEE..EEEEE CS
                   B3  88 sefelvvkvf 97 
                          + f  +v+++
  GSBRNA2T00048159001 737 MAF--HVTLL 744
                          777..77665 PP
4B368.59.4e-22793880897
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          +++l+ + l lp++f++++g++++++ +++l++e+g+sW++ l  +k sg++++++GW++F++an Lk+g + +Fkl++ s++++v+++f
  GSBRNA2T00048159001 793 PSSLRYDTLNLPRSFVRSNGLETRCGGEIVLMNEKGKSWTLAL-KQKLSGSTYIRRGWRRFCSANVLKTGGVYTFKLIH-SGRTPVLRLF 880
                          67888999***********************************.5888899**************************99.8888999887 PP
5B3512.5e-169381027899
                           -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3    8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95  
                           + +l++ +l++p +f ++hg+++e   ++tl d++g +W+  l+ + +s+r+ l +GW+eF k n +k g++++ kl+++ ++++v+k
  GSBRNA2T00048159001  938 PFNLEKYILYFPVRFSRSHGINEE--AKMTLLDKNGVKWSTDLRSEETSDRIRLVGGWQEFFKTNCMKPGESIIVKLIWEGDKSCVLK 1023
                           556778889***********9955..58****************************************************9999**** PP

                           EE-S CS
                   B3   96 vfrk 99  
                           +++k
  GSBRNA2T00048159001 1024 FCSK 1027
                           9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1645141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-1848144IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-1649143No hitNo description
PfamPF023622.5E-1651140IPR003340B3 DNA binding domain
SMARTSM010192.6E-2751147IPR003340B3 DNA binding domain
PROSITE profilePS5086313.95851147IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-23170282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-17178277IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-13178270IPR003340B3 DNA binding domain
PROSITE profilePS5086312.746178270IPR003340B3 DNA binding domain
PfamPF023624.5E-11187263IPR003340B3 DNA binding domain
CDDcd100173.67E-12191267No hitNo description
Gene3DG3DSA:2.40.330.101.9E-5294347IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.061296398IPR003340B3 DNA binding domain
SMARTSM010190.05296380IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-20653760IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125654747IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-18654754IPR015300DNA-binding pseudobarrel domain
CDDcd100179.89E-13655744No hitNo description
SMARTSM010196.2E-22657747IPR003340B3 DNA binding domain
PfamPF023622.4E-9665740IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-20779877IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-19781878IPR015300DNA-binding pseudobarrel domain
CDDcd100179.16E-16786880No hitNo description
PROSITE profilePS5086314.734786883IPR003340B3 DNA binding domain
SMARTSM010197.4E-27787883IPR003340B3 DNA binding domain
PfamPF023621.8E-20792880IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-179231027IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-189261025IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.9159311028IPR003340B3 DNA binding domain
SMARTSM010193.0E-189311028IPR003340B3 DNA binding domain
PfamPF023621.2E-149361027IPR003340B3 DNA binding domain
CDDcd100177.54E-149431025No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1034 aa     Download sequence    Send to blast
MNNSEKEVKT EADSSSSDHP CPLALVTASN VRKATQCRER RPPTSPSQKQ FMKLKLAHDS  60
LIRGRQYLSV PFMRANGMTK PGLITLVGKD GVKWKVNLKE EGSGSALCLG TGWKEFAKAN  120
GLKTGDYFTL ESAWKNEIPM LSLVNTESAS DRKERGESSK AMEKERSTDT SSIVQNRVVT  180
LALETKDVKA CTLTIPVAFL KHIEGTNEHH KAKMRSDASK ITWEVKIENG RRLTNGWKEF  240
ALAHDLRIGD ILIFRQEKDM AFHVTLLGPS GCEIQYESCS EEKNNIGEFC VLSPSCFVAY  300
VSPATLRHDK LNLPRSFVRA NGLEKRCGDI VVMNEKSKSW TLALKQELCR NKPKNKFFRQ  360
NRKINFLIET KTEFSHRNRK IEFSHQNRKT EFSRQNKNEF SRRNRKTEFP AKNEKPNCSR  420
QNRKQVSRQN LTNFPAKTVK TSFSAKTAKT SFSAKTRKII FPANHKNLFS RRNRKTEFSR  480
QNRKIEFFRQ NKNEFSRRNR KTEFFRQKRK IEFSRQKRKI EFSRQNRKTD KNRKTEFFRQ  540
KFAKRLFPPK SKTGFPPKLT NFPAKTVKTS FFRQNCKNET YENSTENMDQ PNQTWRIVCE  600
ANGLKLGKSF TLEIINEHDK AAPVFNWVIT LFSPRIEVYS SRDSELLKFM RMPNKRFFKP  660
LLPGFHSHLT IPVAFFLKYI EGTNEHHTAK LRSDASKITW EVKIEDGQKL TDGWKEFAIA  720
HDLRIGDILM FRQEKDMAFH VTLLGPSGCE FQYESCSEEE NNLGRNIPKK KNLEREAESS  780
SLDPSCFLAT IWPSSLRYDT LNLPRSFVRS NGLETRCGGE IVLMNEKGKS WTLALKQKLS  840
GSTYIRRGWR RFCSANVLKT GGVYTFKLIH SGRTPVLRLF FTESESESEE RNVEKIQRKK  900
AESSSLDPSS FVANNPTSTW KASSSQSQNR FLTLALKPFN LEKYILYFPV RFSRSHGINE  960
EAKMTLLDKN GVKWSTDLRS EETSDRIRLV GGWQEFFKTN CMKPGESIIV KLIWEGDKSC  1020
VLKFCSKVKN ETK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.65864e-64seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048159001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2957788e-65AM295778.1 Brassica oleracea var. alboglabra 1col1-O9 gene for CONSTANS-like1 protein and 1co-O9 gene for CONSTANS protein, exons 1-2, clone JBo061D17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140575.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
SwissprotO230761e-114REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A078JIZ80.0A0A078JIZ8_BRANA; BnaCnng48580D protein
STRINGBra032075.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-114B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]