PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00047827001 | ||||||||
Common Name | GSBRNA2T00047827001, LOC106371619 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 851aa MW: 93054.7 Da PI: 5.8455 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.1e-18 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR ++k+ GSBRNA2T00047827001 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECsilaNIEPKQIKVWFQNRRCRDKQ 83 56789***************************************************996 PP | |||||||
2 | START | 153.9 | 1.3e-48 | 162 | 367 | 2 | 202 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g GSBRNA2T00047827001 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPV-KIAEILKDRPSWFRDCRSLEVFTMFPAGngG 250 7899******************************************************.7777777777***********999999999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++++a+++l+p Rdf+++Ry+ +l g++v++++S++ p+ s++vRae+l Sg+li+p+++g+s +++v+h +l+++ GSBRNA2T00047827001 251 TIELVYMQTYAPTTLAPaRDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNaasASQFVRAEMLSSGYLIRPCDGGGSIIHIVDHLNLEAW 340 *******************************************999999989999*********************************** PP XXHHHHHHHHHHHHHHHHHHHHHHTXX CS START 176 lphwllrslvksglaegaktwvatlqr 202 +++ +lr+l++s+ + ++k++ ++l++ GSBRNA2T00047827001 341 SVPDVLRPLYESSKVVAQKMTISALRY 367 *********************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.305 | 20 | 84 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-16 | 21 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-16 | 22 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.31E-16 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 1.3E-15 | 26 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.29E-6 | 77 | 116 | No hit | No description |
PROSITE profile | PS50848 | 27.127 | 152 | 380 | IPR002913 | START domain |
CDD | cd08875 | 8.35E-68 | 156 | 372 | No hit | No description |
SuperFamily | SSF55961 | 1.14E-34 | 161 | 373 | No hit | No description |
SMART | SM00234 | 4.7E-38 | 161 | 371 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.7E-19 | 161 | 366 | IPR023393 | START-like domain |
Pfam | PF01852 | 2.9E-46 | 162 | 368 | IPR002913 | START domain |
Pfam | PF08670 | 4.0E-46 | 695 | 849 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence Send to blast |
MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS 60 ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM NKLLMEENDR LQKQVSQLVC 120 ENGYMKQQLT TTVVNDPSCD SVVTTPQHSL RDANSPAGLL SIAEETLAEF LSKATGTAVD 180 WVQMPGMKPG PDSVGIFAIS QRCSGVAARA CGLVSLEPVK IAEILKDRPS WFRDCRSLEV 240 FTMFPAGNGG TIELVYMQTY APTTLAPARD FWTLRYTTSL DNGSFVVCER SLSGSGAGPN 300 AASASQFVRA EMLSSGYLIR PCDGGGSIIH IVDHLNLEAW SVPDVLRPLY ESSKVVAQKM 360 TISALRYIRQ LAQESNGELV YGLGRQPAVL RTFSQRLSRG FNDAVNGFGD DGWSTMHCDG 420 AEDIIVAINS TKHLNNMSNS LSFLGGVLCA KASMLLQNVP PAVLIRFLRE HRSEWADFNV 480 DAYSAATLKA GSFAYPGMRP TRFTGSQIIM PLGHTIEHEE MLEVVRLEGH SLAQEDAFMS 540 RDVHLLQICT GIDENAVGAC SELIFAPINE MFPDDAPLVP SGFRVIPVDA KTGDAQDLLT 600 ANHRTLDLTS SLEVGPTPEN ASGNSSSSSS SRCILTIAFQ FPFENNLQDN VAGMACQYVR 660 SVISSVQRVA MAISPSGISP SLGSKLSPGS PEAVTLAQWI SQSYTHHLGS ELLTVDSLGS 720 NDSVLKLLWD HQDAILCCSL KPQPVFMFAN QAGLDMLETT LVALQDITLE KIFDESGRKA 780 LCSDFAKLMQ QGYACLPSGI CLSTMGRHVT YEQAVAWKVF APAASSSENN DGNDNTLHCL 840 AFSFVNWSFV * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the earliest stages and throughout LSM initiation and development. In embryo development, expressed at the heart stage until the 'walking stick' stage in the adaxial portion of the cotyledon primordia, the shoot apical meristem (SAM) and the vascular precursor cells of the hypocotyl and root. In developing flowers, expressed first at stage 1 in the center of L3 layer and then expands to the center of L2 and L1 layers. Expressed in the center of flower meristem through stages 4 and 5. At stage 6, expressed in the adaxial side of the carpel primordia and then on the adaxial carpel face. {ECO:0000269|PubMed:11169198}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the interfascicular regions of stem and vascular bundles of young roots and leaves. {ECO:0000269|PubMed:10559440}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00047827001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229564 | 0.0 | AK229564.1 Arabidopsis thaliana mRNA for REVOLUTA or interfascicular fiberless 1, complete cds, clone: RAFL19-08-C22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013667152.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
Refseq | XP_013667153.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
Refseq | XP_013667154.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A078H290 | 0.0 | A0A078H290_BRANA; BnaA10g13520D protein | ||||
STRING | Bra002458.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4779 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106371619 |