PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00047645001 | ||||||||
Common Name | GSBRNA2T00047645001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LSD | ||||||||
Protein Properties | Length: 245aa MW: 27240.4 Da PI: 7.9178 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.4 | 2.3e-13 | 156 | 180 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrG ++V+C++C+tV GSBRNA2T00047645001 156 CGSCRRLLSYPRGTKHVKCSCCQTV 180 ************************9 PP | |||||||
2 | zf-LSD1 | 42.7 | 9.1e-14 | 194 | 218 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++C lL+YP+GApsVRC++C V GSBRNA2T00047645001 194 CSNCELLLMYPYGAPSVRCSSCKSV 218 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.0E-17 | 153 | 183 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.3E-11 | 156 | 180 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.4E-10 | 191 | 219 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-11 | 194 | 218 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSRHGVSVSP SPKLGFGRDK LNGTYKPVFL YNSYGFGLDN VTTCSVRLKI EPKTKEEKIE 60 CPVLVYRNQC HIPVCLVFIS GEFSHLCKRV MIAEAETKDM MEEIQSQKKE EDEDEEEGPP 120 PGWESTVLPP PPISAAEISG IFNQSVFRGS MAQMVCGSCR RLLSYPRGTK HVKCSCCQTV 180 NLVLEAYQVG QVKCSNCELL LMYPYGAPSV RCSSCKSVTD IREDNKRPPW SVLQGPLKTF 240 SSVR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00047645001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009108490.1 | 2e-85 | PREDICTED: protein LOL2 | ||||
Swissprot | O65426 | 5e-59 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A078H3K3 | 1e-180 | A0A078H3K3_BRANA; BnaC03g64060D protein | ||||
STRING | Bo3g162470.1 | 5e-92 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13611 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-53 | lsd one like 2 |
Publications ? help Back to Top | |||
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