PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047337001
Common NameGSBRNA2T00047337001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 217aa    MW: 23848.1 Da    PI: 5.27
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047337001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.21.2e-4254151198
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+d+++s+vyeA ar+rdPvyG++g i +lq+q+++l
  GSBRNA2T00047337001  54 PCAACKILRRRCAEKCVLAPYFPPTDPAKFIIAHRVFGASNIIKFLQELPESQRTDTVNSMVYEAGARMRDPVYGCAGAIYHLQRQVCEL 143
                          7***************************************************************************************** PP

               DUF260  91 kaelallk 98 
                          +a+la+++
  GSBRNA2T00047337001 144 QAQLAKTQ 151
                          ****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.0253154IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-4254151IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MLKMETFGGI SVAAPTSSAV EKTTTPANSA SPTSSPPPPL SPEQPQQQTV VLSPCAACKI  60
LRRRCAEKCV LAPYFPPTDP AKFIIAHRVF GASNIIKFLQ ELPESQRTDT VNSMVYEAGA  120
RMRDPVYGCA GAIYHLQRQV CELQAQLAKT QVDLVSMQLQ RSDLLELLHK TEQANLSEQQ  180
EGQQNMSFEM TNDLGFLDCN NNNNNSSMLW SDPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-395315510112LOB family transfactor Ramosa2.1
5ly0_B6e-395315510112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047337001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2409851e-156AC240985.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008O16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013726732.11e-148LOB domain-containing protein 11-like
SwissprotQ9SK081e-104LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A078H1441e-160A0A078H144_BRANA; BnaC03g46840D protein
STRINGBo3g040220.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-101LOB domain-containing protein 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]