PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00046380001

Common Name

GSBRNA2T00046380001, LOC106362869

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 150aa MW: 17103.4 Da PI: 8.0281

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00046380001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.1	6.7e-12	51	95	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++ +r ++NRe+A+rsR+RKk + e L+e+v L+++N++L ++l GSBRNA2T00046380001 51 RKRKRTISNRESAKRSRLRKKRRFEDLTEEVNRLKSKNQELVNQL 95 577999*********************************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-11	47	118	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-9	48	112	No hit	No description
Pfam	PF07716	5.3E-9	49	97	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.703	49	98	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-9	51	99	No hit	No description
PROSITE pattern	PS00036	0	54	69	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MSSTSLEPVR ICFDDATITG DEITEILEFL QSDTSDNPSG SNELEAPVDE RKRKRTISNR 60 ESAKRSRLRK KRRFEDLTEE VNRLKSKNQE LVNQLANVLS CGNAISKENN RLKTESVCLE 120 FRLLELYRFL VAMQSPISTS LNYISKLMI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	72	RKRTISNRESAKRSRLRKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00046380001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013658157.1	1e-103	basic leucine zipper 4
Refseq	XP_022567848.1	1e-103	basic leucine zipper 4-like
Swissprot	Q9LQ65	8e-69	BZIP4_ARATH; Basic leucine zipper 4
TrEMBL	A0A078GWM2	1e-102	A0A078GWM2_BRANA; BnaC09g15210D protein
TrEMBL	A0A3P6DF19	1e-102	A0A3P6DF19_BRAOL; Uncharacterized protein
STRING	Bo9g048720.1	1e-102	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12232	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	3e-60	basic leucine-zipper 4

Link Out ? help Back to Top
Entrez Gene	106362869

Publications ? help Back to Top
Guo YL, et al. Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol., 2011. 157(2): p. 757-69 [PMID:21810963] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Ma H, et al. ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development. Plant Physiol., 2018. 178(2): p. 753-770 [PMID:30126870]