PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00046305001 | ||||||||
Common Name | GSBRNA2T00046305001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 359aa MW: 41155.9 Da PI: 6.2875 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.9 | 7.1e-20 | 18 | 66 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g+l++++ GSBRNA2T00046305001 18 SSSSYSFAATSLNSRLLTIFKKAQELTTLCDIEACVIHYGPDGELKTWP 66 7899********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.292 | 27 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.28E-14 | 30 | 101 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-10 | 32 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MRSPRPSSCS KYSSASSSSS SYSFAATSLN SRLLTIFKKA QELTTLCDIE ACVIHYGPDG 60 ELKTWPEDRD KVRDLALRYI QLDEAKRRKK NVNLHEFLNK MEDKKTMLQK FKKRAKKNVE 120 ELKYPISDHY SPGQINQLIH SLELSYSKLQ ERRRFLAAKA NLEDRQHSFI PSHFTQESVL 180 KNQELYVNDK NNNSFQHLCV SDYSAVQESA LRYHSMLYGG TYDQNMMCMG NSNNVQHPWL 240 SNAHPTELQE PNQLMQRELN YGFDQNMCMS DTTNSFSVVD PCLPNMLPDD FCFDFQDPYG 300 GNMVGNPSFS QDFFPDMSSS YVYGSRLLQE STLPSLSSSN ITNENSEIPS NLPDDHRE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00046305001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013745627.1 | 0.0 | agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 1e-57 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | A0A078H1Y5 | 0.0 | A0A078H1Y5_BRANA; BnaC04g26930D protein | ||||
STRING | Bra025607.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40120.1 | 2e-59 | AGAMOUS-like 76 |
Publications ? help Back to Top | |||
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