PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00045367001

Common Name

GSBRNA2T00045367001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 291aa MW: 32831.9 Da PI: 4.4727

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00045367001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.8	2.5e-15	11	102	3	99
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ++ ++dv+ s+rlvlp ++ + + + ++t +l+ ++g+ W+vk ++++ + +++GW++F +n+ +gDf+ F++dg+++f GSBRNA2T00045367001 11 IIFNSKDVSLSQRLVLPSDYRQYYP--APLPQTAVLRKPEGNFWTVKW--AISQEEeISFGDGWSKFIAENDPIDGDFLQFSYDGSRSF- 95 56667899999******974444..55899************..444444499********************998888. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v++fr+ GSBRNA2T00045367001 96 -LVSIFRN 102 .**996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.65E-18	5	102	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.4E-17	6	102	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.69E-15	7	101	No hit	No description
PROSITE profile	PS50863	13.634	9	103	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-14	9	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-13	9	102	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.75E-5	194	277	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.4E-4	194	277	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MVFTPYPDFL IIFNSKDVSL SQRLVLPSDY RQYYPAPLPQ TAVLRKPEGN FWTVKWAISQ 60 EEEISFGDGW SKFIAENDPI DGDFLQFSYD GSRSFLVSIF RNGLPVKPTA PVTIQDISDD 120 DEDKTAGDGD EKKEEEDYDQ NMIISLSLGS SDEDYDADKT VSEVNKADGT LKRGSSSQRI 180 RAQSIGDPEM YLDDPKNPCF IATSSSCRRM LVIAMQVIKD YDLKFDGTIK FIDGFGELEG 240 KIGNWKDRVV VYSWQEIYNR NHAKPGDVII CEILREGGVV RSIKAHFVKK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00045367001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126820.1	0.0	PREDICTED: B3 domain-containing protein At5g57720-like
Swissprot	Q9FHH1	1e-117	Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBL	A0A078JII4	0.0	A0A078JII4_BRANA; BnaA02g35370D protein
STRING	Bra020417.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13797	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57720.1	1e-109	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]