PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045030001
Common NameGSBRNA2T00045030001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 181aa    MW: 20940.5 Da    PI: 9.9544
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045030001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.62e-11108160454
                          XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaLkkeleelkk 54 
                          ++r +r+ kNRe+A rsR+RK++  +i eLe ++  L++eN +Lk + e+lk 
  GSBRNA2T00045030001 108 DRRHKRMTKNRESAARSRARKQEraYINELELEIVHLQKENARLKRQEEQLKM 160
                          799******************963379******************99999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-5105167IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.542107159IPR004827Basic-leucine zipper domain
PfamPF001704.5E-9108160IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.5E-10109159No hitNo description
CDDcd147071.80E-23109165No hitNo description
SuperFamilySSF579597.74E-8109159No hitNo description
PROSITE patternPS000360112127IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTQVTMEEVW KDINLASLHQ HRHLNIDHEP VLSNQNPNKS IFQDFLNKPL NQEPPPTPSS  60
THHGSLFSPP ATVISLNTHS IDTHFDESAM FGCFGKKRGQ DSDESRGDRR HKRMTKNRES  120
AARSRARKQE RAYINELELE IVHLQKENAR LKRQEEQLKM AEATQHQTKK ILQRSWTSPF  180
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045030001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022548116.11e-133bZIP transcription factor 27-like
SwissprotQ7PCC64e-81FDP_ARATH; bZIP transcription factor 27
TrEMBLA0A078GYL61e-132A0A078GYL6_BRANA; BnaA09g09300D protein
STRINGBo9g024710.11e-122(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.28e-81basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]