PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00043984001
Common NameGSBRNA2T00043984001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 292aa    MW: 32588.4 Da    PI: 8.7698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00043984001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000123961123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  GSBRNA2T00043984001 39 YSCSFCRREFKSAQALGGHMNVH 61
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.38E-63665No hitNo description
SMARTSM003550.00843961IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1573966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEKPGGVWIP KKSNKESSWE ELAFAEDDAA GSLWPPRSYS CSFCRREFKS AQALGGHMNV  60
HRRDRARLKQ SEDQYLFSKS SSPPEYPSHN YSDDVRETSS YTLVFNSNPN RFESQRSCVI  120
DLSSSPSSLP YLTPRVSSSS PSFVVESSNN SKKITSSSPW SFPGKKGCDI YEVPFMEGSK  180
KRKIDRDVPK NGDKAKVSLE NTTDLPVIMN LVIHKDCPIT AQGGDEETGK GDMIHKRRRM  240
REGSSQPSIF ISSLSCKSAI ITRNEEIKHK GGHFEDLDLE LRLGGDPRKA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-123461229superman protein
2l1o_A2e-123461229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|PubMed:12154136}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00043984001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691511.10.0zinc finger protein 10-like
SwissprotO809421e-136ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A078JH160.0A0A078JH16_BRANA; BnaA05g34900D protein
TrEMBLA0A3P5Z2E70.0A0A3P5Z2E7_BRACM; Uncharacterized protein
STRINGBra005165.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-109zinc-finger protein 10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]