PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00043370001
Common NameGSBRNA2T00043370001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 341aa    MW: 38664.5 Da    PI: 6.5715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00043370001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-05172191120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  GSBRNA2T00043370001 172 FSCPLCFKTFNRYNNMQMHM 191
                          89*****************9 PP
2zf-C2H213.10.00029256278123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  Cgk F  k + ++H +++
  GSBRNA2T00043370001 256 FACRRCGKAFAVKGDWRTHEKNC 278
                          78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-5172191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66172199IPR007087Zinc finger, C2H2
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5242276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.22E-6242276No hitNo description
PROSITE profilePS501578.767256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSNPACSNLF NNGFDNTNFN YSTSLSYIYN SQNSFYHPDT TNPNYMSPTT TTSTFPNSPP  60
LREALPLLSL SPIRHQEQHG QPCFLNTDNT TSSNFHDVTV DLHLGLPNYG DGGSYIAPEA  120
TTEEQDQDHD QEVEVTVESH LHDDDDHHED LYRGHHYWIP TPAQILIGPT QFSCPLCFKT  180
FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TGMLRLPCFC CAPGCKNNID HPRAKPLKDF  240
RTLQTHYKRK HGSRPFACRR CGKAFAVKGD WRTHEKNCGK LWYCSCGSDF KHKRSLKDHV  300
KAFGNGHVPC GIDSFGGDHE DYYEAASDNE QQDDCNNNEC *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00043370001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022570544.10.0zinc finger protein WIP5-like
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A078GWV80.0A0A078GWV8_BRANA; BnaA05g15460D protein
TrEMBLA0A397ZAB20.0A0A397ZAB2_BRACM; Uncharacterized protein
STRINGBra030450.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-176WIP domain protein 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]