PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00043306001 | ||||||||
Common Name | GSBRNA2T00043306001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 250aa MW: 28998.7 Da PI: 7.0634 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44 | 5e-14 | 135 | 194 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+ +r+++NRe+A+rsR RK+ i +L++ v +L+ eN++Lk++l+ l+ + +++ +++ GSBRNA2T00043306001 135 EKKRKRMESNRESAKRSRMRKQSHINNLRNQVNQLDMENRELKNRLQLLTYQLQRVNTDN 194 6999*********************************************99998877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-13 | 126 | 190 | No hit | No description |
SMART | SM00338 | 3.0E-15 | 132 | 196 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.806 | 134 | 197 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-11 | 135 | 188 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.63E-11 | 136 | 189 | No hit | No description |
CDD | cd14702 | 1.87E-17 | 137 | 184 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 139 | 154 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MLSTVPAFSM SEPGLVNQFQ GFQTGFTPWE WDCSDLFSVN QLSLEPAVPS PCFAESDSGL 60 VKIKSGFDDI KPGSDENYTG FIKTKPGFDE AQSSHGVPDE PDSDDPKQWT AIVSLHSGEQ 120 NHNRNKLIQP EMTEEKKRKR MESNRESAKR SRMRKQSHIN NLRNQVNQLD MENRELKNRL 180 QLLTYQLQRV NTDNIQLVAE QDILRLRLSE MRRILMIRRQ QQWELNNRRM IMTEQNPSTI 240 MDHMIYISK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 153 | KRSRMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00043306001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022572841.1 | 0.0 | basic leucine zipper 63-like | ||||
TrEMBL | A0A078GVQ0 | 0.0 | A0A078GVQ0_BRANA; BnaA03g54260D protein | ||||
STRING | Bo7g118720.1 | 1e-177 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37730.1 | 1e-107 | basic leucine-zipper 7 |
Publications ? help Back to Top | |||
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