PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00042975001 | ||||||||
Common Name | GSBRNA2T00042975001, LOC106346987 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 877aa MW: 96925 Da PI: 6.0293 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.1 | 1.9e-24 | 152 | 253 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F GSBRNA2T00042975001 152 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI 239 99*********************999****996444444..8************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+v+v+r+ GSBRNA2T00042975001 240 --RDEKSQLMVGVRRA 253 ..4577778*****97 PP | |||||||
2 | Auxin_resp | 111.4 | 8.7e-37 | 278 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++++F ++YnPra+++eFv++++k++ka+ +++svGmRf m+feteds +rr++Gt+vg+sd+dp+rW++SkWr+L+ GSBRNA2T00042975001 278 AAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDMDPLRWSGSKWRNLQ 361 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-45 | 142 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-41 | 146 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.39E-23 | 151 | 252 | No hit | No description |
SMART | SM01019 | 1.1E-25 | 152 | 254 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-22 | 152 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-31 | 278 | 361 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-8 | 763 | 851 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 21.754 | 766 | 850 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 6.28E-7 | 780 | 845 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MMASVEEKMK TNGLVNGGTT TTSQSSLLEE MKLLKDQSGT RKPVINSELW HACAGPLVCL 60 PQVGSLVYYF SQGHSEQVAV STRRSATTQV PNYPNLPSQL MCQVHNVTLH ADKDSDEIYA 120 QMSLQPVHSE RDVFPAPDFG LLNRSKHPAE FFCKTLTASD TSTHGGFSVP RRAAEKLFPP 180 LDYTAQPPTQ ELVVRDLHEN TWTFRHIYRG QPKRHLLTTG WSLFVGSKRL RAGDSVLFIR 240 DEKSQLMVGV RRANRQQTAL PSSVLSADSM HIGVLAAAAH ATANRTPFLI FYNPRACPAE 300 FVIPLAKYRK AICGSQLSVG MRFGMMFETE DSGKRRYMGT IVGISDMDPL RWSGSKWRNL 360 QVEWDEPGCN DKPTRVSPWD IETPESLFIF PSLTSGLKRQ LHPSYFAAGE TEWGSLIKRP 420 LIRDSTNGIL PYASFPNMAS EQLMRMMMRP HNNNNNQNAS SFMSEMQQNL LRGHGGLLGD 480 MNMQQQPMVS EMVQPESKLT VNPSTSNTSG QEQNLFQSMS APPKPTLSGC SSGRVNHGNE 540 QKSVEQASQV RTVAVCNESA LSPLQADPCP DTSQQIYPPQ SDPINGFSFL ETEELTSQVS 600 SFQSLAGSYK QPSLLTSQDS SAVVLPDSTN SPLFHDVWDN QLKFDQFSPL MQQDLYGCQD 660 STTSNILDPP PLSNTVLDDF CAIKETDFQN HHPSDCLVGN SNTSFAQDVS QITSASFADS 720 KAISRQDNSG GTTGTSSSNV DFDDTSLLQQ NCKGSWQKLA ATPRVRTYTK VQKTGSVGRS 780 IDVTSFRDYN ELKTAIECMF GLEGLLTRPQ SSGWKLVYVD YESDVLLVGD DPWEEFVGCV 840 RCIRILSPTE VEQMSEEGMK LLNSACINDL KSSVSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 386 | 1 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In early embryo and during organ development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00042975001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979465 | 0.0 | JN979465.1 Brassica rapa subsp. pekinensis auxin response factor 5-1 (ARF5-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013641924.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A078GW89 | 0.0 | A0A078GW89_BRANA; Auxin response factor | ||||
TrEMBL | A0A397YXN3 | 0.0 | A0A397YXN3_BRACM; Auxin response factor | ||||
STRING | Bo5g027930.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106346987 |