PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00042562001
Common NameGSBRNA2T00042562001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 275aa    MW: 31356.2 Da    PI: 9.1266
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00042562001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-192067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd ll+d+v+++G g+W+++ar  g++R +k+c++rw +yl
  GSBRNA2T00042562001 20 KGPWTAEEDRLLIDYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 67
                         79********************************************97 PP
2Myb_DNA-binding52.61.1e-1673117147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  GSBRNA2T00042562001  73 RGQITPHEETIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8061571IPR017930Myb domain
SuperFamilySSF466891.35E-3017114IPR009057Homeodomain-like
SMARTSM007177.2E-171969IPR001005SANT/Myb domain
PfamPF002491.0E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-242174IPR009057Homeodomain-like
CDDcd001672.03E-122267No hitNo description
PROSITE profilePS5129419.68272122IPR017930Myb domain
SMARTSM007174.7E-1572120IPR001005SANT/Myb domain
PfamPF002495.1E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2475121IPR009057Homeodomain-like
CDDcd001671.29E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSLWGVMGAG WGIVEEGWRK GPWTAEEDRL LIDYVRLHGE GRWNSVARLA GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPHE ETIILELHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  120
KTKSPTNNAE KTKNRIFKRQ QFQQQRQMEY QQEQQLLQLN QIDMKKIMSF LEDENNHNNG  180
DSNFSTSSSG SSGEGGAFYV PHPITHSSTS SGYESNGNGF FPVVSVPLPE ANVHEVYGIW  240
DGLWNLDLEG QGSFNDGACV PRKPCFQNLG VPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-262012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00042562001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022550828.10.0transcription repressor MYB6-like
TrEMBLA0A078JDH00.0A0A078JDH0_BRANA; BnaCnng44540D protein
TrEMBLA0A3P6F1M50.0A0A3P6F1M5_BRAOL; Uncharacterized protein
STRINGBo1g098860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-128myb domain protein 305
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]