PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041830001
Common NameGSBRNA2T00041830001, LOC106409756
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 241aa    MW: 26122.6 Da    PI: 4.8957
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041830001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.72.2e-372783662
               zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                          +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++++
  GSBRNA2T00041830001 27 PSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRTK 83
                         58***************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-232376IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.632781IPR003851Zinc finger, Dof-type
PfamPF027011.7E-312881IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MERTEALTSS FIWRPNANAN ANAEITPSCP RCGSSNTKFC YYNNYSLTQP RYFCKGCRRY  60
WTKGGSLRNV PVGGGCRKSR RTKSSSSNAK TGVTASSCNS GGGSPNIDLA LVYANFLNPK  120
PDEPTLQATC DLATGASMEP SNWSMDIGDD HHYDHQVEHI IEECGYNGLP PFPGEELLSI  180
DTNSVWSDAL LIGHNNHIEV GGVTSAETVH EPVVNFADES NDSTNFLFGS WSPFDFSTDG  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.109580.0microspore-derived embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041830001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597296.11e-180PREDICTED: dof zinc finger protein DOF3.5
RefseqXP_013705781.11e-180dof zinc finger protein DOF3.5
SwissprotQ9SVC51e-138DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A078GVE11e-179A0A078GVE1_BRANA; BnaC07g32880D protein
TrEMBLA0A0D3DE601e-179A0A0D3DE60_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RCI21e-179A0A3N6RCI2_BRACR; Uncharacterized protein
TrEMBLA0A3P6F5J31e-179A0A3P6F5J3_BRAOL; Uncharacterized protein
STRINGBo7g102590.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91412238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-132Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]