PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041524001
Common NameGSBRNA2T00041524001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 285aa    MW: 31282.7 Da    PI: 10.061
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041524001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.53.1e-1222601350
                         HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
               SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                         +  R +++lKKA+ELS LC+++v++i + ++g+l ++++
  GSBRNA2T00041524001 22 YNARAATVLKKAFELSELCGVDVCIIWYDHEGNLvKTWP 60
                         55699*************************998637887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.15E-112197IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.7182255IPR002100Transcription factor, MADS-box
PfamPF003193.4E-82456IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKMNKLLVRK DTIFKKPSSS LYNARAATVL KKAFELSELC GVDVCIIWYD HEGNLVKTWP  60
ENEEAKVRAI AERYSMLSEE ERGKKRNNLS GFLNKKMIRD KKESSSFALH RRRARRRPPP  120
MSKKKKTKLL PSGDSPSGSA VSVDSTASVD STAPADSTAS APPSLMPISA DPAANIAVSP  180
QHAMISATDD SVPEKKEHEV QSSHIPVGEL PHLVSEPEQE KLSDVQLQPS KPSPNVITSQ  240
TTLWRDKVKH NGGRLDPQGT PFLLDSGEPC VKIPNSVIEK NKKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110125RRRARRRPPPMSKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041524001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078GTM50.0A0A078GTM5_BRANA; BnaC06g26390D protein
STRINGBo6g098600.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.12e-30AGAMOUS-like 54
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]