PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041369001
Common NameGSBRNA2T00041369001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 437aa    MW: 48480 Da    PI: 4.9397
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041369001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.42.3e-33181102103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+ ++e++sws+ ++sfvv+   ef+   LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  GSBRNA2T00041369001  18 FLSKTYDMVDDPLTDEVVSWSSGNKSFVVWYVPEFSILFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFIRGQK 98 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k +
  GSBRNA2T00041369001  99 QLLKSIVRRKPS 110
                          ********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3512102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-5414107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-3214107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.3E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MRSNCESSTT VVSSIPPFLS KTYDMVDDPL TDEVVSWSSG NKSFVVWYVP EFSILFLPKY  60
FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFIRGQKQL LKSIVRRKPS QVQPPQQPQA  120
QHSSRDKNVL TQELVGLRQQ QQVTEHHLQN VGQKVHVMEQ RQQQMMSFLA KAVQSPGFLN  180
QFSQQNNEGN NQHVSEGNKK RRLPVEEQKY AGGYGANGLS CQIVRYQSSM NEAADTMLEQ  240
IHNMSNPHSR QEPLSNNHGS FLLGDVPNIS DNGSSTNGAS GVTLADVSSN PAINYHVPCE  300
ANQILEGSLP YAQVDLLAPN QGAAYGSSNS DVVGCETDNE ECLDPIMAVL AGSMGLEANA  360
VNELLPGVQD PLWEQFFGER PVIGDTEELV SGSVDNGLIM EQLELQSNLR NVLSSNQQMN  420
HLTEQMGFLT SDALRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-231311015123Heat shock factor protein 1
5d5u_B6e-231310724129Heat shock factor protein 1
5d5v_B6e-231310724129Heat shock factor protein 1
5d5v_D6e-231310724129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.171453e-69seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041369001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130326.10.0PREDICTED: heat stress transcription factor A-1e
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A078GTA20.0A0A078GTA2_BRANA; BnaCnng06170D protein
STRINGBra032023.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]