PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041300001
Common NameGSBRNA2T00041300001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 273aa    MW: 31332.8 Da    PI: 5.7628
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041300001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.3e-2063116356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t++q++ Le+ Fe ++++  e++++LA+klgL+ rqV vWFqNrRa++k
  GSBRNA2T00041300001  63 KKRRLTSQQVHLLEKSFETENKLEPERKTQLANKLGLQPRQVAVWFQNRRARWK 116
                          56789************************************************9 PP
2HD-ZIP_I/II1291.9e-4162154193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl+++qv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ k+++ Lr+e
  GSBRNA2T00041300001  62 EKKRRLTSQQVHLLEKSFETENKLEPERKTQLANKLGLQPRQVAVWFQNRRARWKTKQLERDFNLLKSSYDQLLSNYDSILKDNHLLRSE 151
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  GSBRNA2T00041300001 152 VTS 154
                          875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-2048120IPR009057Homeodomain-like
PROSITE profilePS5007117.94558118IPR001356Homeobox domain
SMARTSM003893.8E-1961122IPR001356Homeobox domain
CDDcd000863.12E-1763119No hitNo description
PfamPF000461.8E-1763116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-2164125IPR009057Homeodomain-like
PRINTSPR000317.8E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000317.8E-698114IPR000047Helix-turn-helix motif
PfamPF021834.0E-15118160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MESNSFFFDP SLSHGNMFFL NPAAVQEAKS MMTTEESSKR RPFFCSHEDL YDDDYYDDHT  60
PEKKRRLTSQ QVHLLEKSFE TENKLEPERK TQLANKLGLQ PRQVAVWFQN RRARWKTKQL  120
ERDFNLLKSS YDQLLSNYDS ILKDNHLLRS EVTSLVEKLQ AKEDTTNKPP GQVPEANPQQ  180
QLHPVNMNQI EPPIKTEDRL SSGSTVLDED DAPQLLDSCN SYFPIIAPIH HSEGHNNRNG  240
SVNDRSCFVD VFVPTTSPPH GHGESLGFWG WT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.50351e-126leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041300001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022570295.10.0homeobox-leucine zipper protein HAT5-like isoform X1
SwissprotQ022831e-125HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A078GVJ30.0A0A078GVJ3_BRANA; BnaCnng05590D protein
STRINGBra040519.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-128homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]