PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00041004001 | ||||||||
Common Name | GSBRNA2T00041004001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 27190.8 Da PI: 8.4826 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.2e-18 | 122 | 176 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k GSBRNA2T00041004001 122 RKKLRLTKQQSIVLEENFKMHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTK 176 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.4 | 4.5e-39 | 122 | 211 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q+ +LEe+F+++++L+p++K++lar+L l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ + GSBRNA2T00041004001 122 RKKLRLTKQQSIVLEENFKMHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTKLKQTEMDCEFLKKCCETLTDENRRLQKELQDLK-A 210 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l GSBRNA2T00041004001 211 L 211 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00221 | 0 | 38 | 46 | IPR022357 | Major intrinsic protein, conserved site |
PROSITE profile | PS50071 | 16.844 | 118 | 178 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-17 | 120 | 186 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.6E-14 | 120 | 182 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.9E-15 | 122 | 176 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.61E-14 | 122 | 179 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-16 | 122 | 176 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 153 | 176 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.8E-10 | 178 | 212 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.4E-25 | 178 | 221 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005215 | Molecular Function | transporter activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGLDDSCNTG LVLGLGLSPT HNSYNYAIKK SSATVDHHVN PSLTLSLSGE SYKVEKTVSG 60 AGDQIYRQTS SHSGISSFSS GRIKREREVC GDGEEEAEET EKRVVCSRVR DDHEDEEGVS 120 ARKKLRLTKQ QSIVLEENFK MHSTLNPKQK QALARQLSLR PRQVEVWFQN RRARTKLKQT 180 EMDCEFLKKC CETLTDENRR LQKELQDLKA LKMSQPFYMH IPPATLIGAF SIPFINPSAA 240 C* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 178 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.23528 | 6e-57 | flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00041004001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441254 | 0.0 | AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013685562.1 | 1e-157 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 1e-129 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A078JG62 | 1e-180 | A0A078JG62_BRANA; BnaAnng19250D protein | ||||
STRING | Bra010612.1-P | 1e-153 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-120 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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