PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040233001
Common NameGSBRNA2T00040233001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 547aa    MW: 61114.1 Da    PI: 4.6013
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040233001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.53.9e-47171432128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           pGfrFhPtdeelv++yLk+k+ +k+l++ ++i  vd+yk+eP dLp +  +k+++++w++F++r++ky++  r+ r t++gyWkatgkd
  GSBRNA2T00040233001  17 VPGFRFHPTDEELVMYYLKRKMYRKRLTV-NAIGVVDVYKIEPDDLPgEsVLKTGDRQWFYFTPRSRKYPNAARSGRGTATGYWKATGKD 105
                          69*************************99.89**************96347788999********************************9 PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++  +++ vglkktLvfy+grap+ge+tdWvmhey++
  GSBRNA2T00040233001 106 PVIVY-NSRSVGLKKTLVFYRGRAPTGERTDWVMHEYTM 143
                          99999.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.26716166IPR003441NAC domain
SuperFamilySSF1019415.62E-5317166IPR003441NAC domain
PfamPF023652.3E-2418142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MANPCPNSCF KEGKFTVPGF RFHPTDEELV MYYLKRKMYR KRLTVNAIGV VDVYKIEPDD  60
LPGESVLKTG DRQWFYFTPR SRKYPNAARS GRGTATGYWK ATGKDPVIVY NSRSVGLKKT  120
LVFYRGRAPT GERTDWVMHE YTMNEEELHP CKNAKDYYAL YKLFKKSGSG PKNGEDYGAP  180
FQEKEWVDDD SDSDSEDGDD IALPEEPLAL VRHEDTRFVD NARLFEPVNV QLDDFEEIPQ  240
ICINGLASSV PQVNREEEIQ STLVNNSSGE FLKPQQTGRF LPNGEPYIRP SSSGVEPFVF  300
EKEDYIEMDD LLASELAVER PAQFLNPGEF GDFNEFDQLF HDVSMSLDME PIAQGASVHP  360
SSPSKFADNK SNEKQQFQDQ IPENKVNNNN LDDFTDNMWF QDDDDQAVLF DQPQSITSGA  420
FAPLPSSGVM PGSTNLTVSA QDQEGENGGG TSPFTSALWA FMDSIPSTPA SACEGPINRT  480
FVRMSSFSRI RYSKKVNGTP PVTSTVVAKK RSRNRGFLVL SIVGALCAIF WVFIATVQAS  540
GRPVLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-421814317140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1509514KRSRNR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.243560.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00040233001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145145.10.0PREDICTED: NAC domain-containing protein 17-like
SwissprotQ9XIC50.0NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A078GS920.0A0A078GS92_BRANA; BnaA05g18390D protein
TrEMBLA0A397ZB670.0A0A397ZB67_BRACM; Uncharacterized protein
STRINGBra034436.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.10.0NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  4. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  5. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  6. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  7. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  8. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]