PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00039661001

Common Name

GSBRNA2T00039661001, LOC106374781

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 197aa MW: 22248.3 Da PI: 9.9665

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00039661001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	62	116	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L rq+ vWFqNrRa+ k GSBRNA2T00039661001 62 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSK 116 78889************************************************98 PP
2	HD-ZIP_I/II	116.9	1.2e-37	62	150	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+ kr++ +l+e+n+rL++eveeLr + GSBRNA2T00039661001 62 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYFKRWFGSLTEQNHRLHREVEELR-A 150 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-18	45	116	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-19	45	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	58	118	IPR001356	Homeobox domain
SMART	SM00389	2.4E-17	60	122	IPR001356	Homeobox domain
CDD	cd00086	9.30E-15	61	119	No hit	No description
Pfam	PF00046	6.3E-16	62	116	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
SMART	SM00340	3.0E-20	118	161	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	3.8E-8	118	152	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MAILPENSSN LDLTISVPGF SSSPPSDEGS GGGREQLKLD MNRLPSSEDD DELSHGGSAP 60 PRKKLRLTRE QSRLLEDSFR QNHTLNPKQK EALAKHLMLR PRQIEVWFQN RRARSKLKQT 120 EMECEYFKRW FGSLTEQNHR LHREVEELRA MKVAPSTVTS TSSLTMCPRC ERVTTAASPS 180 MAAPAKKALP LKEREH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00039661001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353448	0.0	AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619404.1	1e-143	PREDICTED: homeobox-leucine zipper protein ATHB-17-like isoform X2
Refseq	XP_013670184.1	1e-143	homeobox-leucine zipper protein ATHB-17 isoform X2
Swissprot	Q8S9N6	1e-121	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A078JFI9	1e-141	A0A078JFI9_BRANA; BnaC02g47650D protein
TrEMBL	A0A0D3AV67	1e-141	A0A0D3AV67_BRAOL; Uncharacterized protein
STRING	Bo2g134170.1	1e-142	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-101	homeobox-leucine zipper protein 17

Link Out ? help Back to Top
Entrez Gene	106374781

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]