PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00039036001 | ||||||||
Common Name | GSBRNA2T00039036001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 238aa MW: 27133.9 Da PI: 10.5701 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.8 | 2.7e-14 | 160 | 210 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ k+ GSBRNA2T00039036001 160 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNQDLQRKQAEIMKT 210 79***************************************9887776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.9E-11 | 156 | 214 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.461 | 158 | 209 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-11 | 160 | 211 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.4E-13 | 160 | 209 | No hit | No description |
SuperFamily | SSF57959 | 1.0E-9 | 160 | 209 | No hit | No description |
CDD | cd14707 | 1.21E-20 | 160 | 212 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 163 | 178 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MNMDELLKNI WTAEETTQPI MTTTSSIASV QQPRGLVQRQ GSLTLPRTLS QKTVDEVWKH 60 LMSKDSCNGR DAPERQETLG EMTLEDFLLR AGVVKEDGNN SSMILNQAQQ PHQQQLQQPH 120 QRLPPTIYPK HANVTFSAPV MGKAGGRRSN TGVVEKVVER RQKRMIKNRE SAARSRARKQ 180 AYTLELEAEI ENLKQLNQDL QRKQAEIMKT QKNEEPSKQR PWLAKTQCLR RTLTGPW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00039036001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX122892 | 1e-152 | JX122892.1 Brassica napus ABA-responsive element binding factor 1 (ABF1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591825.1 | 1e-149 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X2 | ||||
Swissprot | Q9M7Q5 | 9e-99 | AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4 | ||||
TrEMBL | A0A078GTX2 | 1e-174 | A0A078GTX2_BRANA; BnaC06g02640D protein | ||||
STRING | Bo6g018480.1 | 1e-142 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49720.1 | 2e-84 | abscisic acid responsive element-binding factor 1 |
Publications ? help Back to Top | |||
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