PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038789001
Common NameGSBRNA2T00038789001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 511aa    MW: 58148.9 Da    PI: 4.1185
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038789001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM401.2e-121672904127
                  NAM   4 GfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           +rF+P+  e++   Lk+ +++++     ++++++ +  d ++++ w+  +  + +e++ w+f +++++++ +++  +r  + g+Wka g
  GSBRNA2T00038789001 167 YVRFSPKSPEVI-LLLKRFIRKEQmptcaVQFHSHADLQDTVSSNGWSAAAyPYFEEDEYWFFLHRKQQATDKKNVDRRLGDLGTWKARG 255
                          58**********.789999999995544333322344447888899998742333455566777777777777777777999******** PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          ++++++  + +lvg+k+   + kg+    +kt W+  ey+
  GSBRNA2T00038789001 256 RSTNIYI-GAQLVGIKQKYELMKGK----VKTGWFQFEYT 290
                          *******.99********9999554....57899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3005.0E-4481IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF1019412.48E-12156295IPR003441NAC domain
PROSITE profilePS5100514.465164308IPR003441NAC domain
PfamPF023659.7E-7167290IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MSSGPGNFCL VHVSLVPVLN VVGEQTGAQI IYAKYSGTEV EECKRKTSSS FAIVPALEHI  60
FTLFDAPNIW HIPILLGSEV CIYTSCFCLL VFLICCLVGW IPDHNPDAYK AAKGLRMYSL  120
QRKCNRSLEK IILEAVMITC WLKVLEVSIV TVCLIMLLQI KIDLPDYVRF SPKSPEVILL  180
LKRFIRKEQM PTCAVQFHSH ADLQDTVSSN GWSAAAYPYF EEDEYWFFLH RKQQATDKKN  240
VDRRLGDLGT WKARGRSTNI YIGAQLVGIK QKYELMKGKV KTGWFQFEYT RFSNKFEKIC  300
VAHLIFVKKP EVDYPSDISE EEEEEEEEEQ EEEEEEEESA DEEEQGLQVQ APEVELVNEQ  360
QGLHEQVLNL EEEEAAASDE VEQTLANEQQ RLQQVQSHEV ELGNEHQGLQ EQVVNFAHEE  420
ALTFVNDFLD DDDDEDWARF LNTDDDGLAI DDLFEDGDSE KTLEHVNEQQ SLQDQVLNLE  480
EEAAAAADDE EEQTRVNEVE QQGGVAGTSS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.192450.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00038789001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013727286.10.0FK506-binding protein 5-like
RefseqXP_013727287.10.0FK506-binding protein 5-like
RefseqXP_013727289.10.0FK506-binding protein 5-like
RefseqXP_013727290.10.0FK506-binding protein 5-like
RefseqXP_022545521.10.0FK506-binding protein 5-like
TrEMBLA0A078GMU80.0A0A078GMU8_BRANA; BnaA07g05000D protein
STRINGBra015108.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2031833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-08NAC domain containing protein 100
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]